Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

GPMDB

General information

URL: http://rest.thegpm.org;;http://wiki.thegpm.org/wiki/GPMDB_REST;;http://www.thegpm.org
Full name: Global Proteome Machine and Database
Description: The Global Proteome Machine and Database (GPMDB) representational state transfer (REST) service was designed to provide simplified access to the proteomics information in GPMDB using a stable set of methods and parameters.
Year founded: 2015
Last update: 2018
Version: 1.0
Accessibility:
Accessible
Country/Region: United States

Contact information

University/Institution: New York University Langone Medical Center
Address: Department of Biochemistry and Molecular Pharmacology, New York University Langone Medical Center, New York, NY, USA
City: New York
Province/State:
Country/Region: United States
Contact name (PI/Team): Ronald C. Beavis
Contact email (PI/Helpdesk): rbeavis@thegpm.org

Publications

25697819
The GPMDB REST interface. [PMID: 25697819]
Fenyƶ D, Beavis RC.

The Global Proteome Machine and Database (GPMDB) representational state transfer (REST) service was designed to provide simplified access to the proteomics information in GPMDB using a stable set of methods and parameters. Version 1 of this interface gives access to 25 methods for retrieving experimental information about protein post-translational modifications, amino acid variants, alternate splicing variants and protein cleavage patterns.
AVAILABILITY AND IMPLEMENTATION: GPMDB data and database tables are freely available for commercial and non-commercial use. All software is also freely available, under the Artistic License. http://rest.thegpm.org/1 (GPMDB REST Service), http://wiki.thegpm.org/wiki/GPMDB_REST (Service description and help), and http://www.thegpm.org (GPM main project description and documentation). The code for the interface and an example REST client is available at ftp://ftp.thegpm.org/repos/gpmdb_rest

Bioinformatics. 2015:31(12) | 24 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
3888/6895 (43.626%)
Gene genome and annotation:
1201/2021 (40.623%)
Genotype phenotype and variation:
563/1005 (44.08%)
Modification:
241/337 (28.783%)
Interaction:
724/1194 (39.447%)
3888
Total Rank
22
Citations
2.2
z-index

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Record metadata

Created on: 2018-01-28
Curated by:
Sidra Younas [2018-04-14]