Database Commons
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a catalog of worldwide biological databases

Database Profile

NeuroElectro

General information

URL: http://neuroelectro.org
Full name:
Description: The goal of the NeuroElectro Project is to extract information about the electrophysiological properties (e.g. resting membrane potentials and membrane time constants) of diverse neuron types from the existing literature and place it into a centralized database.
Year founded: 2014
Last update:
Version:
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

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Keywords:

Contact information

University/Institution: Carnegie Mellon University
Address: Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA
City:
Province/State:
Country/Region: United States
Contact name (PI/Team): Shreejoy J. Tripathy
Contact email (PI/Helpdesk): moc.liamg@3tapirts

Publications

24808858
NeuroElectro: a window to the world's neuron electrophysiology data. [PMID: 24808858]
Tripathy SJ, Savitskaya J, Burton SD, Urban NN, Gerkin RC.

The behavior of neural circuits is determined largely by the electrophysiological properties of the neurons they contain. Understanding the relationships of these properties requires the ability to first identify and catalog each property. However, information about such properties is largely locked away in decades of closed-access journal articles with heterogeneous conventions for reporting results, making it difficult to utilize the underlying data. We solve this problem through the NeuroElectro project: a Python library, RESTful API, and web application (at http://neuroelectro.org) for the extraction, visualization, and summarization of published data on neurons' electrophysiological properties. Information is organized both by neuron type (using neuron definitions provided by NeuroLex) and by electrophysiological property (using a newly developed ontology). We describe the techniques and challenges associated with the automated extraction of tabular electrophysiological data and methodological metadata from journal articles. We further discuss strategies for how to best combine, normalize and organize data across these heterogeneous sources. NeuroElectro is a valuable resource for experimental physiologists attempting to supplement their own data, for computational modelers looking to constrain their model parameters, and for theoreticians searching for undiscovered relationships among neurons and their properties.

Front Neuroinform. 2014:8() | 72 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
2043/6895 (70.384%)
Literature:
192/577 (66.898%)
2043
Total Rank
69
Citations
6.273
z-index

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Record metadata

Created on: 2018-01-28
Curated by:
Mansoor Khan [2018-04-10]
Qi Wang [2018-01-28]