Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

GBIF

General information

URL: http://www.gbif.es
Full name: Global Biodiversity Information Facility
Description: GBIF (Global Biodiversity Information Facility) is an open data science infrastructure funded by the world's governments, and intended to provide anyone from anywhere in the world with access to information about the living beings that inhabit the Earth.
Year founded: 2013
Last update:
Version:
Accessibility:
Accessible
Country/Region: Spain

Classification & Tag

Data type:
Data object:
NA
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: Global Biodiversity Information Facility
Address: Department of Zoology and Ecology, University of Navarra, Pamplona, Navarra, Spain
City: Madrid
Province/State:
Country/Region: Spain
Contact name (PI/Team): Javier Otegui
Contact email (PI/Helpdesk): javier.otegui@gmail.com

Publications

24843289
URJC GB dataset: Community-based seed bank of Mediterranean high-mountain and semi-arid plant species at Universidad Rey Juan Carlos (Spain). [PMID: 24843289]
Alonso P, Iriondo JM.

The Germplasm Bank of Universidad Rey Juan Carlos was created in 2008 and currently holds 235 accessions and 96 species. This bank focuses on the conservation of wild-plant communities and aims to conserve ex situ a representative sample of the plant biodiversity present in a habitat, emphasizing priority ecosystems identified by the Habitats Directive. It is also used to store plant material for research and teaching purposes. The collection consists of three subcollections, two representative of typical habitats in the center of the Iberian Peninsula: high-mountain pastures (psicroxerophylous pastures) and semi-arid habitats (gypsophylic steppes), and a third representative of the genus Lupinus. The high-mountain subcollection currently holds 153 accessions (63 species), the semi-arid subcollection has 76 accessions (29 species,) and the Lupinus subcollection has 6 accessions (4 species). All accessions are stored in a freezer at -18 °C in Kilner jars with silica gel. The Germplasm Bank of Universidad Rey Juan Carlos follows a quality control protocol which describes the workflow performed with seeds from seed collection to storage. All collectors are members of research groups with great experience in species identification. Herbarium specimens associated with seed accessions are preserved and 63% of the records have been georreferenced with GPS and radio points. The dataset provides unique information concerning the location of populations of plant species that form part of the psicroxerophylous pastures and gypsophylic steppes of Central Spain as well as populations of genus Lupinus in the Iberian Peninsula. It also provides relevant information concerning mean seed weight and seed germination values under specific incubation conditions. This dataset has already been used by researchers of the Area of Biodiversity and Conservation of URJC as a source of information for the design and implementation of experimental designs in these plant communities. Since they are all active subcollections in continuous growth, data is updated regularly every six months and the latest version can be accessed through the GBIF data portal at http://www.gbif.es:8080/ipt/resource.do?r=germoplasma-urjc. This paper describes the URJC Germplasm Bank and its associated dataset with the aim of disseminating the dataset and explaining how it was derived.

PhytoKeys. 2014:(35) | 0 Citations (from Europe PMC, 2025-12-20)
23372828
Assessing the primary data hosted by the Spanish node of the Global Biodiversity Information Facility (GBIF). [PMID: 23372828]
Otegui J, Ariño AH, Encinas MA, Pando F.

In order to effectively understand and cope with the current 'biodiversity crisis', having large-enough sets of qualified data is necessary. Information facilitators such as the Global Biodiversity Information Facility (GBIF) are ensuring increasing availability of primary biodiversity records by linking data collections spread over several institutions that have agreed to publish their data in a common access schema. We have assessed the primary records that one such publisher, the Spanish node of GBIF (GBIF.ES), hosts on behalf of a number of institutions, considered to be a highly representative sample of the total mass of available data for a country in order to know the quantity and quality of the information made available. Our results may provide an indication of the overall fitness-for-use in these data. We have found a number of patterns in the availability and accrual of data that seem to arise naturally from the digitization processes. Knowing these patterns and features may help deciding when and how these data can be used. Broadly, the error level seems low. The available data may be of capital importance for the development of biodiversity research, both locally and globally. However, wide swaths of records lack data elements such as georeferencing or taxonomical levels. Although the remaining information is ample and fit for many uses, improving the completeness of the records would likely increase the usability span for these data.

PLoS One. 2013:8(1) | 15 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
4978/6895 (27.817%)
Metadata:
506/719 (29.764%)
4978
Total Rank
14
Citations
1.167
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Record metadata

Created on: 2018-01-28
Curated by:
raza muhammad [2018-04-17]
raza muhammad [2018-04-11]
Qi Wang [2018-01-28]