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Database Commons

a catalog of worldwide biological databases

Database Profile

IntDb

General information

URL: http://introndb.bicpu.edu.in/
Full name: A comprehensive database for classified introns of saccharomyces & human
Description: IntDb is a comprehensive database for classified introns of saccharomyces & human,which meant for classifying introns as start, middle and stop on the basis of position of specific consensus site.
Year founded: 2012
Last update:
Version:
Accessibility:
Unaccessible
Country/Region: India

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Pondicherry University
Address: Centre for Bioinformatics, School of Life Sciences, Pondicherry University, R.V. Nagar, Kalapet, Puducherry - 605014
City: Pondicherry
Province/State:
Country/Region: India
Contact name (PI/Team): Amouda Nizam
Contact email (PI/Helpdesk): amouda@yahoo.com

Publications

22493526
IntDb: A comprehensive database for classified introns of saccharomyces & human. [PMID: 22493526]
Mohanty S, Nizam A, Biswal M.

Introns (intra-genic) are non-coding regions of several eukaryotic genes. However, their role in regulation of transcription, embryonic development, stimulate gene (HEG) is apparent in recent years. Thus current research focuses on mutation in introns and their influence in causing various diseases. Though many available intron databases like YIDB, IDB, ExInt, GISSD, FUGOID, etc. discusses on various aspects of introns but none of them have classified the introns where identification of start intron is found to be important which mainly regulates the various activities of protein at gene level. This lead to an idea for development of "Intdb"; a database meant for classifying introns as start, middle and stop on the basis of position of specific consensus site. Information provided in IntDb is useful for gene prediction, determination of splicing sites and identification of diseases. In addition, the main focus is on violation of consensus rule and frequency of other deviations observed in classified introns. Further, GC content, length variations according to the biased residues and occurrence of consensus pattern to discover potential role of introns is also emphasized in IntDb.
AVAILABILITY: The database is available for free at http://introndb.bicpu.edu.in/

Bioinformation. 2012:8(5) | 0 Citations (from Europe PMC, 2025-12-20)

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Record metadata

Created on: 2018-01-29
Curated by:
Pei Wang [2018-03-27]
Pei Wang [2018-03-11]
Pei Wang [2018-03-07]
Pei Wang [2018-02-24]