Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

Cerrado (Brazil) plant cytogenetics database

General information

URL: http://cyto.shinyapps.io/cerrado
Full name: Cerrado (Brazil) plant cytogenetics database
Description: The Database of Cytogenetics of Cerrado plants and its website is presented, making an important step in facilitating access to most known cytogenetic attributes. The aim of this study was to assess the current cytogenetic knowledge of Cerrado plants, aiming to provide a consistent database that didn’t exclude any attribute and diagnose recent progress in the field.
Year founded: 2017
Last update:
Version:
Accessibility:
Accessible
Country/Region: Brazil

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Federal University
Address: Programa de pós-graduação em Genética e Melhoramento de Plantas, Escola de Agronomia, Universidade Federal de Goiás, 74001-970, Goiânia, GO, Brazil,
City: Goiânia
Province/State:
Country/Region: Brazil
Contact name (PI/Team): Fernando Roa
Contact email (PI/Helpdesk): fernando.roa@ufpe.br

Publications

28919965
The Cerrado (Brazil) plant cytogenetics database. [PMID: 28919965]
Roa F, Telles MPC.

Cerrado is a biodiversity hotspot that has lost ca. 50% of its original vegetation cover and hosts ca. 11,000 species belonging to 1,423 genera of phanerogams. For a fraction of those species some cytogenetic characteristics like chromosome numbers and C-value were available in databases, while other valuable information such as karyotype formula and banding patterns are missing. In order to integrate and share all cytogenetic information published for Cerrado species, including frequency of cytogenetic attributes and scientometrics aspects, Cerrado plant species were searched in bibliographic sources, including the 50 richest genera (with more than 45 taxa) and 273 genera with only one species in Cerrado. Determination of frequencies and the database website (http://cyto.shinyapps.io/cerrado) were developed in R. Studies were pooled by employed technique and decade, showing a rise in non-conventional cytogenetics since 2000. However, C-value estimation, heterochromatin staining and molecular cytogenetics are still not common for any family. For the richest and best sampled families, the following modal 2n counts were observed: Oxalidaceae 2n = 12, Lythraceae 2n = 30, Sapindaceae 2n = 24, Solanaceae 2n = 24, Cyperaceae 2n = 10, Poaceae 2n = 20, Asteraceae 2n = 18 and Fabaceae 2n = 26. Chromosome number information is available for only 16.1% of species, while there are genome size data for only 1.25%, being lower than the global percentages. In general, genome sizes were small, ranging from 2C = ca. 1.5 to ca. 3.5 pg. Intra-specific 2n number variation and higher 2n counts were mainly related to polyploidy, which relates to the prevalence of even haploid numbers above the mode of 2n in most major plant clades. Several orphan genera with almost no cytogenetic studies for Cerrado were identified. This effort represents a complete diagnosis for cytogenetic attributes of plants of Cerrado.

Comp Cytogenet. 2017:11(2) | 4 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
6095/6895 (11.617%)
Gene genome and annotation:
1827/2021 (9.649%)
6095
Total Rank
4
Citations
0.5
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Related Databases

Citing
Cited by

Record metadata

Created on: 2018-01-28
Curated by:
Lina Ma [2018-04-18]
Sidra Younas [2018-04-18]
Yang Zhang [2018-01-28]