Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

SPRED1

General information

URL: http://www.lovd.nl/SPRED1
Full name: SPRED1 mutation database
Description: The database contains 89 different mutations identified in 146 unrelated probands, including 16 new variants described for the first time. The database contains a spectrum of mutations: 29 missense, 28 frameshift, 19 nonsense, eight copy number changes, two splicing, one silent, one in-frame deletion and a mutation affecting the initiation codon.
Year founded: 2012
Last update:
Version:
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: University of Alabama at Birmingham
Address: Department of Genetics, Medical Genomics Laboratory, University of Alabama at Birmingham, 1530 3rd Avenue South, Kaul 330, Birmingham, Alabama 35294-0024
City: Leuven
Province/State:
Country/Region: United States
Contact name (PI/Team): Ludwine Messiaen
Contact email (PI/Helpdesk): dbabovic@mayo.edu

Publications

22753041
Review and update of SPRED1 mutations causing Legius syndrome. [PMID: 22753041]
Brems H, Pasmant E, Van Minkelen R, Wimmer K, Upadhyaya M, Legius E, Messiaen L.

Legius syndrome presents as a mild neurofibromatosis type 1 (NF1) phenotype. Multiple café-au-lait spots and macrocephaly are present with or without axillary or inguinal freckling. Other typical NF1-associated features (Lisch nodules, bone abnormalities, neurofibromas, optic pathway gliomas, and malignant peripheral nerve sheath tumors) are systematically absent. Legius syndrome is caused by germline loss-of-function SPRED1 mutations, resulting in overactivation of the RAS-MAPK signal transduction cascade. The first families were identified in 2007. Here, we review all identified SPRED1 mutations and summarize molecular, clinical, and functional data. All mutations have been deposited in a database created using the Leiden Open Variation Database software and accessible at http://www.lovd.nl/SPRED1. At present, the database contains 89 different mutations identified in 146 unrelated probands, including 16 new variants described for the first time. The database contains a spectrum of mutations: 29 missense, 28 frameshift, 19 nonsense, eight copy number changes, two splicing, one silent, one in-frame deletion and a mutation affecting the initiation codon. Sixty-three mutations and deletions are definitely pathogenic or most likely pathogenic, eight SPRED1 mutations are probably benign rare variants, and 17 SPRED1 missense mutations are still unclassified and need further family and functional studies to help with the interpretation.

Hum Mutat. 2012:33(11) | 75 Citations (from Europe PMC, 2026-05-09)

Ranking

All databases:
2160/6932 (68.855%)
Genotype phenotype and variation:
314/1013 (69.102%)
2160
Total Rank
72
Citations
5.143
z-index

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Record metadata

Created on: 2018-01-29
Curated by:
Pei Wang [2018-03-27]
Pei Wang [2018-03-08]
Pei Wang [2018-03-06]