Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

SynBioLGDB

General information

URL: http://bioinformatics.ac.cn/synbiolgdb
Full name: SynBioLGDB
Description: SynBioLGDB aims to provide the synthetic biology community with a useful resource for efficient browsing and visualization of genetic logic gates.
Year founded: 2015
Last update:
Version:
Accessibility:
Unaccessible
Country/Region: China

Contact information

University/Institution: Harbin Medical University
Address: College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China
City: Harbin
Province/State: Heilongjiang
Country/Region: China
Contact name (PI/Team): Dong Wang
Contact email (PI/Helpdesk): wangdong@ems.hrbmu.edu.cn

Publications

25627341
SynBioLGDB: a resource for experimentally validated logic gates in synthetic biology. [PMID: 25627341]
Wang L, Qian K, Huang Y, Jin N, Lai H, Zhang T, Li C, Zhang C, Bi X, Wu D, Wang C, Wu H, Tan P, Lu J, Chen L, Li K, Li X, Wang D.

Synthetic biologists have developed DNA/molecular modules that perform genetic logic operations in living cells to track key moments in a cell's life or change the fate of a cell. Increasing evidence has also revealed that diverse genetic logic gates capable of generating a Boolean function play critically important roles in synthetic biology. Basic genetic logic gates have been designed to combine biological science with digital logic. SynBioLGDB (http://bioinformatics.ac.cn/synbiolgdb/) aims to provide the synthetic biology community with a useful resource for efficient browsing and visualization of genetic logic gates. The current version of SynBioLGDB documents more than 189 genetic logic gates with experimental evidence involving 80 AND gates and 16 NOR gates, etc. in three species (Human, Escherichia coli and Bacillus clausii). SynBioLGDB provides a user-friendly interface through which conveniently to query and browse detailed information about these genetic logic gates. SynBioLGDB will enable more comprehensive understanding of the connection of genetic logic gates to execute complex cellular functions in living cells.

Sci Rep. 2015:5() | 6 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
5928/6895 (14.039%)
Gene genome and annotation:
1784/2021 (11.776%)
Genotype phenotype and variation:
867/1005 (13.831%)
Metadata:
592/719 (17.803%)
5928
Total Rank
6
Citations
0.6
z-index

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Record metadata

Created on: 2018-01-29
Curated by:
raza muhammad [2018-04-13]