Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

5S rRNAdb

General information

URL: http://rose.man.poznan.pl/5SData/5SRNA
Full name: 5S rRNA Database
Description: The 5S rRNA Database contains 1622 primary structures of 5S rRNAs and 5S rRNA genes from 888 species. These include 58 archaeal, 427 eubacterial, 34 plastid, nine mitochondrial and 1094 eukaryotic DNA or RNA nucleotide sequences.
Year founded: 1998
Last update:
Version:
Accessibility:
Unaccessible
Country/Region: Germany

Classification & Tag

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Data object:
Database category:
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Keywords:

Contact information

University/Institution: Institute of Bioorganic Chemistry of the Polish Academy of Sciences
Address:
City:
Province/State:
Country/Region: Germany
Contact name (PI/Team): Volker A. Erdmann
Contact email (PI/Helpdesk): erdmann@chemie.fu-berlin.de

Publications

9399822
5S rRNA Data Bank. [PMID: 9399822]
Szymanski M, Specht T, Barciszewska MZ, Barciszewski J, Erdmann VA.

In this paper we present the updated version of the compilation of 5S rRNA and 5S rDNA nucleotide sequences. It contains 1622 primary structures of 5S rRNAs and 5S rRNA genes from 888 species. These include 58 archaeal, 427 eubacterial, 34 plastid, nine mitochondrial and 1094 eukaryotic DNA or RNA nucleotide sequences. The sequence entries are divided according to the taxonomic position of the organisms. All individual sequences deposited in the 5S rRNA Database can be retrieved using the WWW-based, taxonomic browser at http://rose.man.poznan.pl/5SData/5SRNA.html++ + or http://www.chemie. fu-berlin.de/fb_chemie/agerdmann/5S_rRNA.html . The files with complete sets of data as well as sequence alignments are available via anonymous ftp.

Nucleic Acids Res. 1998:26(1) | 32 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
5005/6895 (27.426%)
Gene genome and annotation:
1509/2021 (25.383%)
5005
Total Rank
31
Citations
1.148
z-index

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Record metadata

Created on: 2018-02-07
Curated by:
Lin Liu [2021-11-11]
Yang Zhang [2018-02-24]
Lina Ma [2018-02-07]