| URL: | http://www.rwcp.or.jp/papia |
| Full name: | |
| Description: | PDB-REPRDB is a database of representative protein chains from the Protein Data Bank (PDB). The previous version of PDB-REPRDB provided 48 representative sets, whose similarity criteria were predetermined, on the WWW. |
| Year founded: | 2001 |
| Last update: | |
| Version: | |
| Accessibility: |
Accessible
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| Country/Region: | Japan |
| Data type: | |
| Data object: | |
| Database category: | |
| Major species: |
NA
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| Keywords: |
| University/Institution: | Electrotechnical Laboratory |
| Address: | |
| City: | |
| Province/State: | |
| Country/Region: | Japan |
| Contact name (PI/Team): | Noguchi T |
| Contact email (PI/Helpdesk): | tnoguchi@etl.go.jp |
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PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB). [PMID: 11125096]
PDB-REPRDB is a database of representative protein chains from the Protein Data Bank (PDB). The previous version of PDB-REPRDB provided 48 representative sets, whose similarity criteria were predetermined, on the WWW. The current version is designed so that the user may obtain a quick selection of representative chains from PDB. The selection of representative chains can be dynamically configured according to the user's requirement. The WWW interface provides a large degree of freedom in setting parameters, such as cut-off scores of sequence and structural similarity. One can obtain a representative list and classification data of protein chains from the system. The current database includes 20 457 protein chains from PDB entries (August 6, 2000). The system for PDB-REPRDB is available at the Parallel Protein Information Analysis system (PAPIA) WWW server (http://www.rwcp.or.jp/papia/). |