| URL: | http://cbcg.nersc.gov/asdb |
| Full name: | Alternative Splicing Data Base |
| Description: | ASDB contains 1922 protein and 2486 DNA sequences. The protein entries from SWISS-PROT are joined into clusters corresponding to alternatively spliced variants of one gene. The DNA division consists of complete genes with alternative splicing mentioned or annotated in GenBank. |
| Year founded: | 1999 |
| Last update: | 2000 |
| Version: | |
| Accessibility: |
Unaccessible
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| Country/Region: | United States |
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| University/Institution: | National Energy Research Scientific Computing Center |
| Address: | National Energy Research Scientific Computing Center, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA |
| City: | |
| Province/State: | |
| Country/Region: | United States |
| Contact name (PI/Team): | I. Dubchak |
| Contact email (PI/Helpdesk): | ildubchak@lbl.gov |
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ASDB: database of alternatively spliced genes. [PMID: 10592252]
Version 2.1 of ASDB (Alternative Splicing Data Base) contains 1922 protein and 2486 DNA sequences. The protein entries from SWISS-PROT are joined into clusters corresponding to alternatively spliced variants of one gene. The DNA division consists of complete genes with alternative splicing mentioned or annotated in GenBank. The search engine allows one to search over SWISS-PROT and GenBank fields and then follow the links to all variants. The database can be assessed at the URL http://cbcg.nersc.gov/asdb |
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ASDB: database of alternatively spliced genes. [PMID: 9847209]
A database of alternatively spliced genes (ASDB) has been constructed based on (i) the results of the analysis of Swiss-Prot entries containing products of these genes and (ii) clustering procedure joining proteins that could arise by alternative splicing of the same gene. ASDB incorporates information about alternatively spliced genes, their products and expression patterns. It can be searched in order to find all products of alternative splicing produced in a particular tissue or a given organism, or all variants generated by a particular transcript. ASDB currently contains about 1700 protein sequences and can be accessed via the Internet at URL http://cbcg.nersc.gov/asdb |