Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

Platinum

General information

URL: http://bleoberis.bioc.cam.ac.uk/platinum
Full name: Protein-ligand affinity change upon mutation
Description: A structural database of experimentally measured effects of mutations on protein-ligand complexes
Year founded: 2015
Last update: 2015-01-01
Version: v1.0
Accessibility:
Accessible
Country/Region: United Kingdom

Classification & Tag

Data type:
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Contact information

University/Institution: University of Cambridge
Address: Cambridge CB2 1GA, UK
City: Cambridge
Province/State: Cambridgeshire
Country/Region: United Kingdom
Contact name (PI/Team): David B. Ascher
Contact email (PI/Helpdesk): dascher@svi.edu.au

Publications

25324307
Platinum: a database of experimentally measured effects of mutations on structurally defined protein-ligand complexes. [PMID: 25324307]
Pires DE, Blundell TL, Ascher DB.

Drug resistance is a major challenge for the treatment of many diseases and a significant concern throughout the drug development process. The ability to understand and predict the effects of mutations on protein-ligand affinities and their roles in the emergence of resistance would significantly aid treatment and drug design strategies. In order to study and understand the impacts of missense mutations on the interaction of ligands with the proteome, we have developed Platinum (http://structure.bioc.cam.ac.uk/platinum). This manually curated, literature-derived database, comprising over 1000 mutations, associates for the first time experimental information on changes in affinity with three-dimensional structures of protein-ligand complexes. To minimize differences arising from experimental techniques and to directly compare binding affinities, Platinum considers only changes measured by the same group and with the same amino-acid sequence used for structure determination, providing a direct link between protein structure, how a ligand binds and how mutations alter the affinity of the ligand of the protein. We believe Platinum will be an invaluable resource for understanding the effects of mutations that give rise to drug resistance, a major problem emerging in pandemics including those caused by the influenza virus, in infectious diseases such as tuberculosis, in cancer and in many other life-threatening illnesses. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Nucleic Acids Res. 2015:43(Database issue) | 76 Citations (from Europe PMC, 2026-04-04)

Ranking

All databases:
1781/6932 (74.322%)
Genotype phenotype and variation:
258/1012 (74.605%)
Health and medicine:
434/1755 (75.328%)
1781
Total Rank
74
Citations
6.727
z-index

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Record metadata

Created on: 2015-06-20
Curated by:
Lina Ma [2018-06-14]
Shixiang Sun [2016-03-25]
Shixiang Sun [2015-11-21]
Lina Ma [2015-11-18]
Lina Ma [2015-11-17]
Shixiang Sun [2015-06-28]
Shixiang Sun [2015-06-26]