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a catalog of worldwide biological databases

Database Profile

OligoGenome

General information

URL: http://oligogenome.stanford.edu/
Full name: Stanford Human Oligo Genome Project
Description: A database of oligonucleotide capture probes for resequencing target regions across the human genome
Year founded: 2012
Last update: 2011-11-17
Version: v1.0
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Stanford University
Address:
City: Stanford
Province/State: CA
Country/Region: United States
Contact name (PI/Team): Hanlee P. Ji
Contact email (PI/Helpdesk): genomics_ji@stanford.edu

Publications

22102592
The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome. [PMID: 22102592]
Newburger DE, Natsoulis G, Grimes S, Bell JM, Davis RW, Batzoglou S, Ji HP.

Recent exponential growth in the throughput of next-generation DNA sequencing platforms has dramatically spurred the use of accessible and scalable targeted resequencing approaches. This includes candidate region diagnostic resequencing and novel variant validation from whole genome or exome sequencing analysis. We have previously demonstrated that selective genomic circularization is a robust in-solution approach for capturing and resequencing thousands of target human genome loci such as exons and regulatory sequences. To facilitate the design and production of customized capture assays for any given region in the human genome, we developed the Human OligoGenome Resource (http://oligogenome.stanford.edu/). This online database contains over 21 million capture oligonucleotide sequences. It enables one to create customized and highly multiplexed resequencing assays of target regions across the human genome and is not restricted to coding regions. In total, this resource provides 92.1% in silico coverage of the human genome. The online server allows researchers to download a complete repository of oligonucleotide probes and design customized capture assays to target multiple regions throughout the human genome. The website has query tools for selecting and evaluating capture oligonucleotides from specified genomic regions.

Nucleic Acids Res. 2012:40(Database issue) | 3 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
6580/6895 (4.583%)
6580
Total Rank
3
Citations
0.231
z-index

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Record metadata

Created on: 2015-06-20
Curated by:
Zhang Zhang [2016-04-26]
Lin Liu [2016-03-28]
Mengwei Li [2016-02-19]
Li Yang [2015-06-26]