| URL: | http://www.rnabase.org |
| Full name: | An annotated database of RNA structures. |
| Description: | RNABase is a unified database of all three-dimensional structures containing RNA deposited in either the Protein Data Bank (PDB) or Nucleic Acid Data Base (NDB). For each structure, RNABase contains a brief summary as well as annotation of conformational parameters, identification of possible model errors, Ramachandran-style conformational maps and classification of ribonucleotides into conformers. |
| Year founded: | 2003 |
| Last update: | |
| Version: | |
| Accessibility: |
Unaccessible
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| Country/Region: | United States |
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| University/Institution: | Johns Hopkins University |
| Address: | Department of Biophysics, Johns Hopkins University, Jenkins Hall, 3400 N. Charles Street, Baltimore, MD 21218, USA |
| City: | Baltimore |
| Province/State: | MD |
| Country/Region: | United States |
| Contact name (PI/Team): | George D. Rose |
| Contact email (PI/Helpdesk): | grose@jhu.edu |
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RNABase: an annotated database of RNA structures. [PMID: 12520063]
RNABase is a unified database of all three-dimensional structures containing RNA deposited in either the Protein Data Bank (PDB) or Nucleic Acid Data Base (NDB). For each structure, RNABase contains a brief summary as well as annotation of conformational parameters, identification of possible model errors, Ramachandran-style conformational maps and classification of ribonucleotides into conformers. These same analyses can also be performed on structures submitted by users. To facilitate access, structures are automatically placed into a variety of functional and structural categories, including: ribozymes, pseudoknots, etc. RNABase can be freely accessed on the web at http://www.rnabase.org. We are committed to maintaining this database indefinitely. |