Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

PINdb

General information

URL: http://pin.mskcc.org
Full name: Proteins Interacting in the Nucleus database
Description: Proteins Interacting in the Nucleus database (PINdb) is a database of protein complexes purified from the nucleus of human and yeast cells. It is compiled from the published literature and existing databases. Currently, PINdb contains mostly protein complexes that may be involved in gene transcription. To facilitate comparative analyses and identification of protein complexes, the compositional information is integrated with standardized gene nomenclature, annotation and protein sequences from public databases.
Year founded: 2004
Last update:
Version:
Accessibility:
Unaccessible
Country/Region: United States

Classification & Tag

Data type:
Data object:
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Keywords:

Contact information

University/Institution: Memorial Sloan Kettering Cancer Center
Address:
City: New York
Province/State:
Country/Region: United States
Contact name (PI/Team): Phuong-Van Luc
Contact email (PI/Helpdesk): p-tempst@mskcc.org

Publications

15087322
PINdb: a database of nuclear protein complexes from human and yeast. [PMID: 15087322]
Luc PV, Tempst P.

SUMMARY: Proteins Interacting in the Nucleus database (PINdb) is a database of protein complexes purified from the nucleus of human and yeast cells. It is compiled from the published literature and existing databases. Currently, PINdb contains mostly protein complexes that may be involved in gene transcription. To facilitate comparative analyses and identification of protein complexes, the compositional information is integrated with standardized gene nomenclature, annotation and protein sequences from public databases. The PINdb web interface provides a number of tools for (1) comparison of protein complexes, (2) search for a protein complex by its published name or by a partial list of its components and (3) browsing specific subsets or a functional classification of the complexes. Availablity: http://pin.mskcc.org

Bioinformatics. 2004:20(9) | 30 Citations (from Europe PMC, 2026-05-30)

Ranking

All databases:
4605/6932 (33.583%)
Interaction:
845/1202 (29.784%)
4605
Total Rank
30
Citations
1.364
z-index

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Record metadata

Created on: 2018-02-10
Curated by:
Hao Zhang [2018-03-02]