Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

Micro-Mar

General information

URL: http://egg.umh.es/micromar
Full name: A database for dynamic representation of marine microbial biodiversity.
Description: The Micro-Mar database has been created to collect DNA diversity information from marine prokaryotes for biogeographical and ecological analyses. The database currently includes 11874 sequences corresponding to high resolution taxonomic genes (16S rRNA, ITS and 23S rRNA) and many other genes including CDS of marine prokaryotes together with available biogeographical and ecological information.
Year founded: 2005
Last update:
Version:
Accessibility:
Unaccessible
Country/Region: Spain

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: Miguel Hernández University
Address: Evolutionary Genomics Group, Universidad Miguel Hernández, Apartado 18, 03550 San Juan de Alicante, Alicante, Spain.
City: Alicante
Province/State:
Country/Region: Spain
Contact name (PI/Team): Ravindra Pushker
Contact email (PI/Helpdesk): pushker@umh.es

Publications

16153293
Micro-Mar: a database for dynamic representation of marine microbial biodiversity. [PMID: 16153293]
Pushker R, D'Auria G, Alba-Casado JC, Rodríguez-Valera F.

BACKGROUND: The cataloging of marine prokaryotic DNA sequences is a fundamental aspect for bioprospecting and also for the development of evolutionary and speciation models. However, large amount of DNA sequences used to quantify prokaryotic biodiversity requires proper tools for storing, managing and analyzing these data for research purposes.
DESCRIPTION: The Micro-Mar database has been created to collect DNA diversity information from marine prokaryotes for biogeographical and ecological analyses. The database currently includes 11874 sequences corresponding to high resolution taxonomic genes (16S rRNA, ITS and 23S rRNA) and many other genes including CDS of marine prokaryotes together with available biogeographical and ecological information.
CONCLUSION: The database aims to integrate molecular data and taxonomic affiliation with biogeographical and ecological features that will allow to have a dynamic representation of the marine microbial diversity embedded in a user friendly web interface. It is available online at http://egg.umh.es/micromar/.

BMC Bioinformatics. 2005:6() | 5 Citations (from Europe PMC, 2026-04-04)

Ranking

All databases:
6597/6932 (4.847%)
Raw bio-data:
539/587 (8.348%)
6597
Total Rank
5
Citations
0.238
z-index

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Record metadata

Created on: 2018-02-10
Curated by:
Qi Wang [2018-02-17]