Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

DBASS

General information

URL: http://www.dbass.org.uk/
Full name: Databases of Aberrant 3'-ss and 5'-ss in Human Disease Genes
Description: DBASS is a database that provides comprehensive repositories of new exon boundaries induced by pathogenic mutations in human disease genes.
Year founded: 2011
Last update: NA
Version: v1.0
Accessibility:
Accessible
Country/Region: Italy

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: International Centre for Genetic Engineering and Biotechnology
Address: International Centre for Genetic Engineering and Biotechnology,34149 Trieste,Italy
City: Trieste
Province/State:
Country/Region: Italy
Contact name (PI/Team): Igor Vorechovsky
Contact email (PI/Helpdesk): igvo@soton.ac.uk

Publications

20929868
DBASS3 and DBASS5: databases of aberrant 3'- and 5'-splice sites. [PMID: 20929868]
Buratti E, Chivers M, Hwang G, Vorechovsky I.

DBASS3 and DBASS5 provide comprehensive repositories of new exon boundaries that were induced by pathogenic mutations in human disease genes. Aberrant 5'- and 3'-splice sites were activated either by mutations in the consensus sequences of natural exon-intron junctions (cryptic sites) or elsewhere ('de novo' sites). DBASS3 and DBASS5 currently contain approximately 900 records of cryptic and de novo 3'- and 5'-splice sites that were produced by over a thousand different mutations in approximately 360 genes. DBASS3 and DBASS5 data can be searched by disease phenotype, gene, mutation, location of aberrant splice sites in introns and exons and their distance from authentic counterparts, by bibliographic references and by the splice-site strength estimated with several prediction algorithms. The user can also retrieve reference sequences of both aberrant and authentic splice sites with the underlying mutation. These data will facilitate identification of introns or exons frequently involved in aberrant splicing, mutation analysis of human disease genes and study of germline or somatic mutations that impair RNA processing. Finally, this resource will be useful for fine-tuning splice-site prediction algorithms, better definition of auxiliary splicing signals and design of new reporter assays. DBASS3 and DBASS5 are freely available at http://www.dbass.org.uk/.

Nucleic Acids Res. 2011:39(Database issue) | 48 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
3245/6895 (52.951%)
Health and medicine:
807/1738 (53.625%)
3245
Total Rank
43
Citations
3.071
z-index

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Record metadata

Created on: 2015-06-20
Curated by:
Jian Sang [2016-04-04]
Jian Sang [2015-12-01]
Jian Sang [2015-06-26]