| URL: | http://huanglab.phys.hust.edu.cn/pepbdb |
| Full name: | structural database of biological peptide-mediated interactions |
| Description: | An Information Portal to Biological Peptide-protein complex structures |
| Year founded: | 2019 |
| Last update: | 2018-12-09 |
| Version: | |
| Accessibility: |
Accessible
|
| Country/Region: | China |
| Data type: | |
| Data object: |
NA
|
| Database category: | |
| Major species: |
NA
|
| Keywords: |
| University/Institution: | Huazhong University of Science and Technology |
| Address: | |
| City: | Wuhan |
| Province/State: | Hubei |
| Country/Region: | China |
| Contact name (PI/Team): | Sheng-You Huang |
| Contact email (PI/Helpdesk): | huanglab@hust.edu.cn |
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PepBDB: a comprehensive structural database of biological peptide-protein interactions. [PMID: 29982280]
Summary: A structural database of peptide-protein interactions is important for drug discovery targeting peptide-mediated interactions. Although some peptide databases, especially for special types of peptides, have been developed, a comprehensive database of cleaned peptide-protein complex structures is still not available. Such cleaned structures are valuable for docking and scoring studies in structure-based drug design. Here, we have developed PepBDB-a curated Peptide Binding DataBase of biological complex structures from the Protein Data Bank (PDB). PepBDB presents not only cleaned structures but also extensive information about biological peptide-protein interactions, and allows users to search the database with a variety of options and interactively visualize the search results. |