Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

dbSWEET

General information

URL: http://bioinfo.iitk.ac.in/bioinfo/dbSWEET/Home
Full name: Database for SWEET Sugar Transporter family of proteins
Description: a comprehensive database for SWEET Sugar Transporter family of proteins. The database contains details, sequence information and manually curated structural models of more than 2000 SWEET proteins from bacteria, archaea, and eukaryotes.
Year founded: 2018
Last update: 2018-04
Version:
Accessibility:
Accessible
Country/Region: India

Contact information

University/Institution: Indian Institute of Technology Kanpur
Address: Bioinformatics and Biomolecular Simulation Laboratory, Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur, Uttar Pradesh India. 208016
City: Kanpur
Province/State:
Country/Region: India
Contact name (PI/Team): Ramasubbu Sankararamakrishnan
Contact email (PI/Helpdesk): rsankar@iitk.ac.in

Publications

29665371
dbSWEET: An Integrated Resource for SWEET Superfamily to Understand, Analyze and Predict the Function of Sugar Transporters in Prokaryotes and Eukaryotes. [PMID: 29665371]
Gupta A, Sankararamakrishnan R.

SWEET (Sweet Will Eventually be Exported Transporter) proteins have been recently discovered and form one of the three major families of sugar transporters. Homologs of SWEET are found in both prokaryotes and eukaryotes. Bacterial SWEET homologs have three transmembrane segments forming a triple-helical bundle and the functional form is dimers. Eukaryotic SWEETs have seven transmembrane helical segments forming two triple-helical bundles with a linker helix. Members of SWEET homologs have been shown to be involved in several important physiological processes in plants. However, not much is known regarding the biological significance of SWEET homologs in prokaryotes and in mammals. We have collected more than 2000 SWEET homologs from both prokaryotes and eukaryotes. For each homolog, we have modeled three different conformational states representing outward open, inward open and occluded states. We have provided details regarding substrate-interacting residues and residues forming the selectivity filter for each SWEET homolog. Several search and analysis options are available. The users can generate a phylogenetic tree and structure-based sequence alignment for selected set of sequences. With no metazoan SWEETs functionally characterized, the features observed in the selectivity filter residues can be used to predict the potential substrates that are likely to be transported across the metazoan SWEETs. We believe that this database will help the researchers to design mutational experiments and simulation studies that will aid to advance our understanding of the physiological role of SWEET homologs. This database is freely available to the scientific community at http://bioinfo.iitk.ac.in/bioinfo/dbSWEET/Home.

J Mol Biol. 2018:430(15) | 8 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
5575/6895 (19.159%)
Structure:
769/967 (20.579%)
Literature:
468/577 (19.064%)
5575
Total Rank
6
Citations
0.857
z-index

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Record metadata

Created on: 2019-01-03
Curated by:
Dong Zou [2019-01-10]
Dong Zou [2019-01-03]