Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

HaloDom

General information

URL: http://www.halodom.bio.auth.gr
Full name:
Description: a new database of halophiles across all life domains.
Year founded: 2018
Last update:
Version:
Accessibility:
Accessible
Country/Region: Greece

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: Aristotle University of Thessaloniki
Address: Department of Genetics, Development & Molecular Biology, School of Biology, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece.
City: Thessaloniki
Province/State:
Country/Region: Greece
Contact name (PI/Team): Ilias Kappas
Contact email (PI/Helpdesk): ikappas@bio.auth.gr

Publications

29796383
HaloDom: a new database of halophiles across all life domains. [PMID: 29796383]
Alexios Loukas, Ilias Kappas, Theodore J Abatzopoulos

Background: Halophilic organisms may thrive in or tolerate high salt concentrations. They have been studied for decades and a considerable number of papers reporting new halophilic species are being published every year. However, an extensive collection of these salt-loving organisms does not exist nowadays. Halophilic life forms have representatives from all three life domains, Archaea, Bacteria and Eukarya. The purpose of this study was to search for all documented halophilic species in the scientific literature and accommodate this information in the form of an online database.
Results: We recorded more than 1000 halophilic species from the scientific literature. From these, 21.9% belong to Archaea, 50.1% to Bacteria and 27.9% to Eukaryotes. Our records contain basic information such as the salinity that a particular organism was found, its taxonomy and genomic information via NCBI and other links. The online database named "HaloDom" can be accessed at http://www.halodom.bio.auth.gr.
Conclusions: Over the last few years, data on halophiles are growing fast. Compared to previous efforts, this new halophiles database expands its coverage to all life domains and offers a valuable reference system for studies in biotechnology, early life evolution and comparative genomics.

J Biol Res (Thessalon). 2018:25() | 20 Citations (from Europe PMC, 2026-02-07)

Ranking

All databases:
3568/6932 (48.543%)
Gene genome and annotation:
1102/2039 (46.003%)
Pathway:
219/453 (51.876%)
3568
Total Rank
19
Citations
2.375
z-index

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Record metadata

Created on: 2019-01-04
Curated by:
Dong Zou [2019-01-11]
Dong Zou [2019-01-04]