Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

PGD

General information

URL: http://pineapple.angiosperms.org/pineapple/html/index.html
Full name: Pineapple Genomics Database
Description: a comprehensive platform for the most important tropical fruit pineapple.
Year founded: 2018
Last update: 2018-03-20
Version:
Accessibility:
Accessible
Country/Region: China

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Fujian Agriculture and Forestry University
Address:
City: Fuzhou
Province/State: Fujian
Country/Region: China
Contact name (PI/Team): Jisen Zhang
Contact email (PI/Helpdesk): zjisen@126.com

Publications

30245835
PGD: Pineapple Genomics Database. [PMID: 30245835]
Huimin Xu, Qingyi Yu, Yan Shi, Xiuting Hua, Haibao Tang, Long Yang, Ray Ming, Jisen Zhang

Pineapple occupies an important phylogenetic position as its reference genome is a model for studying the evolution the family and the crassulacean acid metabolism (CAM) photosynthesis. Here, we developed a pineapple genomics database (PGD, http://pineapple.angiosperms.org/pineapple/html/index.html) as a central online platform for storing and integrating genomic, transcriptomic, function annotation and genetic marker data for pineapple ( (L.) Merr.). The PGD currently hosts significant search tools and available datasets for researchers to study comparative genomics, gene expression, gene co-expression molecular marker, and gene annotation of (L). PGD also performed a series of additional pages for a genomic browser that visualizes genomic data interactively, bulk data download, a detailed user manual, and data integration information. PGD was developed with the capacity to integrate future data resources, and will be used as a long-term and open access database to facilitate the study of the biology, distribution, and the evolution of pineapple and the relative plant species. An email-based helpdesk is also available to offer support with the website and requests of specific datasets from the research community.

Hortic Res. 2018:5() | 21 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
3285/6895 (52.371%)
Gene genome and annotation:
1015/2021 (49.827%)
3285
Total Rank
21
Citations
3
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Record metadata

Created on: 2019-01-04
Curated by:
Dong Zou [2019-01-12]
Dong Zou [2019-01-04]