| URL: | https://jpostdb.org |
| Full name: | Japan ProteOme STandard Repository/Database |
| Description: | an integrated proteomics data repository and database. |
| Year founded: | 2019 |
| Last update: | 2018 |
| Version: | |
| Accessibility: |
Accessible
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| Country/Region: | Japan |
| Data type: | |
| Data object: |
NA
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| Database category: | |
| Major species: |
NA
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| Keywords: |
| University/Institution: | Kyoto University |
| Address: | Graduate School of Pharmaceutical Sciences, Kyoto University, Kyoto 606-8501, Japan. |
| City: | |
| Province/State: | |
| Country/Region: | Japan |
| Contact name (PI/Team): | Yasushi Ishihama |
| Contact email (PI/Helpdesk): | jpostdb@gmail.com |
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The jPOST environment: an integrated proteomics data repository and database. [PMID: 30295851]
Rapid progress is being made in mass spectrometry (MS)-based proteomics, yielding an increasing number of larger datasets with higher quality and higher throughput. To integrate proteomics datasets generated from various projects and institutions, we launched a project named jPOST (Japan ProteOme STandard Repository/Database, https://jpostdb.org/) in 2015. Its proteomics data repository, jPOSTrepo, began operations in 2016 and has accepted more than 10 TB of MS-based proteomics datasets in the past two years. In addition, we have developed a new proteomics database named jPOSTdb in which the published raw datasets in jPOSTrepo are reanalyzed using standardized protocol. jPOSTdb provides viewers showing the frequency of detected post-translational modifications, the co-occurrence of phosphorylation sites on a peptide and peptide sharing among proteoforms. jPOSTdb also provides basic statistical analysis tools to compare proteomics datasets. |