Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

F-RINGS

General information

URL: http://bioinf.mind.meiji.ac.jp/f-rings
Full name: The genome database of a fairy ring-forming fungus Lepista sordida
Description: F-RINGS is a genome database for Lepista sordida. It provides the genome sequence and gene annotations derived from whole genome sequencing analysis.
Year founded: 2019
Last update:
Version:
Accessibility:
Accessible
Country/Region: Japan

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Meiji University
Address: Bioinformatics Laboratory, School of Agriculture, Meiji University, 1-1-1 Higashi-Mita, Kawasaki, 214-8571, Japan
City:
Province/State:
Country/Region: Japan
Contact name (PI/Team): Kentaro Yano
Contact email (PI/Helpdesk): kyano@isc.meiji.ac.jp

Publications

30971747
Genome sequence analysis of the fairy ring-forming fungus Lepista sordida and gene candidates for interaction with plants. [PMID: 30971747]
Tomoyuki Takano, Naoki Yamamoto, Tomohiro Suzuki, Hideo Dohra, Jae-Hoon Choi, Yurika Terashima, Koji Yokoyama, Hirokazu Kawagishi, Kentaro Yano

Circular patterns called "fairy rings" in fields are a natural phenomenon that arises through the interaction between basidiomycete fungi and plants. Acceleration or inhibition of plant vegetative growth and the formation of mushroom fruiting bodies are both commonly observed when fairy rings form. The gene of an enzyme involved in the biosynthesis of these regulators was recently isolated in the fairy ring-forming fungus, Lepista sordida. To identify other genes involved in L. sordida fairy ring formation, we used previously generated sequence data to produce a more complete draft genome sequence for this species. Finally, we predicted the metabolic pathways of the plant growth regulators and 29 candidate enzyme-coding genes involved in fairy-ring formation based on gene annotations. Comparisons of protein coding genes among basidiomycete fungi revealed two nitric oxide synthase gene candidates that were uniquely encoded in genomes of fairy ring-forming fungi. These results provide a basis for the discovery of genes involved in fairy ring formation and for understanding the mechanisms involved in the interaction between fungi and plants. We also constructed a new web database F-RINGS ( http://bioinf.mind.meiji.ac.jp/f-rings/ ) to provide the comprehensive genomic information for L. sordida.

Sci Rep. 2019:9(1) | 14 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
4025/6895 (41.639%)
Gene genome and annotation:
1233/2021 (39.04%)
4025
Total Rank
12
Citations
2
z-index

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Record metadata

Created on: 2019-09-24
Curated by:
Ghulam Abbas [2019-10-02]
Ghulam Abbas [2019-09-24]