Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

RESPIRE

General information

URL: http://www.dsimb.inserm.fr/respire
Full name:
Description: To provide a more compendious view of erythrocytes and of their protein content, we developed a dedicated database called RESPIRE that aims at gathering a comprehensive and coherent ensemble of information and data about proteins in RBC.
Year founded: 2019
Last update:
Version:
Accessibility:
Accessible
Country/Region: Sweden

Classification & Tag

Data type:
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Major species:
Keywords:

Contact information

University/Institution: University of Nantes
Address: UFIP, University of Nantes, CNRS UMR 6286, Nantes, France Linköping University, SWEDEN
City:
Province/State:
Country/Region: Sweden
Contact name (PI/Team): catherine Etchebest
Contact email (PI/Helpdesk): catherine.etchebest@inserm.fr

Publications

30794542
Repository of Enriched Structures of Proteins Involved in the Red Blood Cell Environment (RESPIRE). [PMID: 30794542]
S Téletchéa, H Santuz, S Léonard, C Etchebest

The Red Blood Cell (RBC) is a metabolically-driven cell vital for processes such a gas transport and homeostasis. RBC possesses at its surface exposing antigens proteins that are critical in blood transfusion. Due to their importance, numerous studies address the cell function as a whole but more and more details of RBC structure and protein content are now studied using massive state-of-the art characterisation techniques. Yet, the resulting information is frequently scattered in many scientific articles, in many databases and specialized web servers. To provide a more compendious view of erythrocytes and of their protein content, we developed a dedicated database called RESPIRE that aims at gathering a comprehensive and coherent ensemble of information and data about proteins in RBC. This cell-driven database lists proteins found in erythrocytes. For a given protein entry, initial data are processed from external portals and enriched by using state-of-the-art bioinformatics methods. As structural information is extremely useful to understand protein function and predict the impact of mutations, a strong effort has been put on the prediction of protein structures with a special treatment for membrane proteins. Browsing the database is available through text search for reference gene names or protein identifiers, through pre-defined queries or via hyperlinks. The RESPIRE database provides valuable information and unique annotations that should be useful to a wide audience of biologists, clinicians and structural biologists. Database URL: http://www.dsimb.inserm.fr/respire.

PLoS ONE. 2019:14(2) | 4 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
5824/6895 (15.547%)
Structure:
813/967 (16.029%)
5824
Total Rank
4
Citations
0.667
z-index

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Record metadata

Created on: 2019-09-25
Curated by:
furrukh mehmood [2019-11-07]
furrukh mehmood [2019-10-23]
Ghulam Abbas [2019-09-25]