Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

HTT-DB

General information

URL: http://lpa.saogabriel.unipampa.edu.br:8080/httdatabase/
Full name: HTT-DB: Horizontally transferred transposable elements database
Description: Horizontally transferred transposable elements database allows easy access to most of HTT cases reported along with rich information about each case. It also allows to generate tables and graphs based on searches using Transposable elements and/or host species classification and export them in several formats.
Year founded: 2015
Last update:
Version:
Accessibility:
Accessible
Country/Region: Brazil

Classification & Tag

Data type:
Data object:
NA
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: Universidade Federal do Pampa
Address: Pós Graduação em Ciências Biológicas, Universidade Federal do Pampa, Brazil
City:
Province/State:
Country/Region: Brazil
Contact name (PI/Team): Gabriel Luz Walla
Contact email (PI/Helpdesk): gabriel.wallau@gmail.com

Publications

29315358
HTT-DB: new features and updates. [PMID: 29315358]
Dotto BR, Carvalho EL, da Silva AF, Dezordi FZ, Pinto PM, Campos TL, Rezende AM, Wallau GDL.

Horizontal Transfer (HT) of genetic material between species is a common phenomenon among Bacteria and Archaea species and several databases are available for information retrieval and data mining. However, little attention has been given to this phenomenon among eukaryotic species mainly due to the lower proportion of these events. In the last years, a vertiginous amount of new HT events involving eukaryotic species was reported in the literature, highlighting the need of a common repository to keep the scientific community up to date and describe overall trends. Recently, we published the first HT database focused on HT of transposable elements among eukaryotes: the Horizontal Transposon Transfer DataBase (http://lpa.saogabriel.unipampa.edu.br: 8080/httdatabase/). Here, we present new features and updates of this unique database: (i) its expansion to include virus-host exchange of genetic material, which we called Horizontal Virus Transfer (HVT) and (ii) the availability of a web server for HT detection, where we implemented the online version of vertical and horizontal inheritance consistence analysis (VHICA), an R package developed for HT detection. These improvements will help researchers to navigate through known HVT cases, take data-informed decision and export figures based on keywords searches. Moreover, the availability of the VHICA as an online tool will make this software easily reachable even for researchers with no or little computation knowledge as well as foster our capability to detect new HT events in a wide variety of taxa. (Database URL: http://lpa.saogabriel.unipampa.edu.br:8080/httdatabase/).

Database (Oxford). 2018:2018() | 11 Citations (from Europe PMC, 2025-12-13)
25940562
HTT-DB: horizontally transferred transposable elements database. [PMID: 25940562]
Bruno Reis Dotto, Evelise Leis Carvalho, Alexandre Freitas Silva, Luiz Fernando Duarte Silva, Paulo Marcos Pinto, Mauro Freitas Ortiz, Gabriel Luz Wallau

MOTIVATION: Horizontal transfer of transposable (HTT) elements among eukaryotes was discovered in the mid-1980s. As then, >300 new cases have been described. New findings about HTT are revealing the evolutionary impact of this phenomenon on host genomes. In order to provide an up to date, interactive and expandable database for such events, we developed the HTT-DB database.
RESULTS: HTT-DB allows easy access to most of HTT cases reported along with rich information about each case. Moreover, it allows the user to generate tables and graphs based on searches using Transposable elements and/or host species classification and export them in several formats.
AVAILABILITY AND IMPLEMENTATION: This database is freely available on the web at http://lpa.saogabriel.unipampa.edu.br:8080/httdatabase. HTT-DB was developed based on Java and MySQL with all major browsers supported. Tools and software packages used are free for personal or non-profit projects.
CONTACT: bdotto82@gmail.com or gabriel.wallau@gmail.com.

Bioinformatics. 2015:31(17) | 42 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
2315/6895 (66.439%)
Phylogeny and homology:
108/302 (64.57%)
Structure:
326/967 (66.391%)
Literature:
211/577 (63.605%)
2315
Total Rank
52
Citations
5.2
z-index

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Record metadata

Created on: 2019-10-20
Curated by:
Lin Liu [2021-11-13]
Amjad Ali [2019-11-12]
Ghulam Abbas [2019-10-20]