| URL: | http://tgsol.seeders.co.kr/scomp |
| Full name: | Translational Genomics for Solanaceae |
| Description: | The tool has a step-by-step interface with multiple viewing levels to support the easy and accurate exploration of functional orthologs. Furthermore, it provides access to single nucleotide-polymorphism markers from the massive genetic resource pool in order to accelerate the development of molecular markers for candidate orthologs in the Solanaceae. This tool provides a bridge between genome data and breeding by supporting effective marker development, data utilization and communication.Database URL: http://tgsol.seeders.co.kr/scomp/. |
| Year founded: | 2018 |
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| Accessibility: |
Accessible
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| Country/Region: | Korea, Republic of |
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| University/Institution: | Chungnam National University |
| Address: | School of Medicine, Biological Sciences, Chungnam National University, Daejeon 34134, Republic of Korea |
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| Country/Region: | Korea, Republic of |
| Contact name (PI/Team): | Sung-Hwan Jo |
| Contact email (PI/Helpdesk): | shjo@seeders.co.kr |
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A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae. [PMID: 29873704]
It is necessary for molecular breeders to overcome the difficulties in applying abundant genomic information to crop breeding. Candidate orthologs would be discovered more efficiently in less-studied crops if the information gained from studies of related crops were used. We developed a comparative analysis tool and web-based genome viewer to identify orthologous genes based synteny as well as sequence similarity between tomato, pepper and potato. The tool has a step-by-step interface with multiple viewing levels to support the easy and accurate exploration of functional orthologs. Furthermore, it provides access to single nucleotide-polymorphism markers from the massive genetic resource pool in order to accelerate the development of molecular markers for candidate orthologs in the Solanaceae. This tool provides a bridge between genome data and breeding by supporting effective marker development, data utilization and communication.Database URL: http://tgsol.seeders.co.kr/scomp/. |