Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

OGRDB

General information

URL: https://ogrdb.airr-community.org
Full name: Open Germline Receptor Database
Description: a reference database of inferred immune receptor genes.
Year founded: 2020
Last update:
Version:
Accessibility:
Accessible
Country/Region: United Kingdom

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: University of London
Address: Institute of Structural and Molecular Biology, Birkbeck College, University of London, London WC1E 7HX, UK
City:
Province/State:
Country/Region: United Kingdom
Contact name (PI/Team): William Lees
Contact email (PI/Helpdesk): william@lees.org.uk

Publications

31566225
OGRDB: a reference database of inferred immune receptor genes. [PMID: 31566225]
Lees W, Busse CE, Corcoran M, Ohlin M, Scheepers C, Matsen FA, Yaari G, Watson CT, AIRR Community, Collins A, Shepherd AJ.

High-throughput sequencing of the adaptive immune receptor repertoire (AIRR-seq) is providing unprecedented insights into the immune response to disease and into the development of immune disorders. The accurate interpretation of AIRR-seq data depends on the existence of comprehensive germline gene reference sets. Current sets are known to be incomplete and unrepresentative of the degree of polymorphism and diversity in human and animal populations. A key issue is the complexity of the genomic regions in which they lie, which, because of the presence of multiple repeats, insertions and deletions, have not proved tractable with short-read whole genome sequencing. Recently, tools and methods for inferring such gene sequences from AIRR-seq datasets have become available, and a community approach has been developed for the expert review and publication of such inferences. Here, we present OGRDB, the Open Germline Receptor Database (https://ogrdb.airr-community.org), a public resource for the submission, review and publication of previously unknown receptor germline sequences together with supporting evidence.

Nucleic Acids Res. 2020:48(D1) | 47 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
1562/6895 (77.36%)
Health and medicine:
381/1738 (78.136%)
1562
Total Rank
44
Citations
8.8
z-index

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Record metadata

Created on: 2019-10-27
Curated by:
furrukh mehmood [2019-11-12]
Amjad Ali [2019-10-27]