Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

VIRdb

General information

URL: http://www.vitiligoinfores.com
Full name: Vitiligo Information Resource database
Description: Vitiligo Information resource (VIRdb) is a comprehensive database which systematically mounts all the information relating to vitiligo in terms of potential protein targets and differentially expressed genes in a user-friendly database. It Integrates both drug-target and systems approach to produce a comprehensive repository entirely devoted to Vitiligo. VIRdb contains virtually screened natural compounds, sourced from present in Natural Product Activity and Species Source Database (NPASS) that can be used to carry wet-lab experiments. The database is rapidly expanding and is integrating genomic data as well. We foresee that VIRdb will be useful for the researchers and clinicians engaged in drug development for Vitiligo
Year founded: 2020
Last update:
Version:
Accessibility:
Accessible
Country/Region: India

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Contact information

University/Institution: Amity University
Address: Amity Institute of Biotechnology, Amity University, Uttar Pradesh, India
City:
Province/State: Uttar Pradesh
Country/Region: India
Contact name (PI/Team): Abhishek Sengupta
Contact email (PI/Helpdesk): ude.ytima@atpugnesa

Publications

32509450
VIRdb: a comprehensive database for interactive analysis of genes/proteins involved in the pathogenesis of vitiligo. [PMID: 32509450]
Priyansh Srivastava, Alakto Choudhury, Mehak Talwar, Sabyasachi Mohanty, Priyanka Narad, Abhishek Sengupta

Vitiligo is a chronic asymptomatic disorder affecting melanocytes from the basal layer of the epidermis which leads to a patchy loss of skin color. Even though it is one of the neglected disease conditions, people suffering from vitiligo are more prone to psychological disorders. As of now, various studies have been done in order to project auto-immune implications as the root cause. To understand the complexity of vitiligo, we propose the Vitiligo Information Resource (VIRdb) that integrates both the drug-target and systems approach to produce a comprehensive repository entirely devoted to vitiligo, along with curated information at both protein level and gene level along with potential therapeutics leads. These 25,041 natural compounds are curated from Natural Product Activity and Species Source Database. VIRdb is an attempt to accelerate the drug discovery process and laboratory trials for vitiligo through the computationally derived potential drugs. It is an exhaustive resource consisting of 129 differentially expressed genes, which are validated through gene ontology and pathway enrichment analysis. We also report 22 genes through enrichment analysis which are involved in the regulation of epithelial cell differentiation. At the protein level, 40 curated protein target molecules along with their natural hits that are derived through virtual screening. We also demonstrate the utility of the VIRdb by exploring the Protein-Protein Interaction Network and Gene-Gene Interaction Network of the target proteins and differentially expressed genes. For maintaining the quality and standard of the data in the VIRdb, the gold standard in bioinformatics toolkits like Cytoscape, Schrödinger's GLIDE, along with the server installation of MATLAB, are used for generating results. VIRdb can be accessed through "http://www.vitiligoinfores.com/".

PeerJ. 2020:8() | 3 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
6641/6895 (3.698%)
Interaction:
1169/1194 (2.178%)
6641
Total Rank
1
Citations
0.2
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Record metadata

Created on: 2020-11-05
Curated by:
Lin Liu [2021-03-25]
Yitong Pan [2020-11-22]
Yitong Pan [2020-11-05]