| URL: | http://tandem.sci.brooklyn.cuny.edu/ |
| Full name: | Tandem Repeats Database |
| Description: | A database for tandem repeats over the edit distance |
| Year founded: | 2010 |
| Last update: | NA |
| Version: | V 1.0 |
| Accessibility: |
Accessible
|
| Country/Region: | United States |
| Data type: | |
| Data object: |
NA
|
| Database category: | |
| Major species: |
NA
|
| Keywords: |
| University/Institution: | City University of New York |
| Address: | 2900 Bedford Avenue,Brooklyn,NY 11210,USA |
| City: | New York |
| Province/State: | |
| Country/Region: | United States |
| Contact name (PI/Team): | Dina Sokol |
| Contact email (PI/Helpdesk): | sokol@sci.brooklyn.cuny.edu |
|
TRedD--a database for tandem repeats over the edit distance. [PMID: 20624712]
A 'tandem repeat' in DNA is a sequence of two or more contiguous, approximate copies of a pattern of nucleotides. Tandem repeats are common in the genomes of both eukaryotic and prokaryotic organisms. They are significant markers for human identity testing, disease diagnosis, sequence homology and population studies. In this article, we describe a new database, TRedD, which contains the tandem repeats found in the human genome. The database is publicly available online, and the software for locating the repeats is also freely available. The definition of tandem repeats used by TRedD is a new and innovative definition based upon the concept of 'evolutive tandem repeats'. In addition, we have developed a tool, called TandemGraph, to graphically depict the repeats occurring in a sequence. This tool can be coupled with any repeat finding software, and it should greatly facilitate analysis of results. Database URL: http://tandem.sci.brooklyn.cuny.edu/ |