| URL: | http://nandesyn.single-cell.cn |
| Full name: | Nannochloropsis Design & Synthesis |
| Description: | To facilitate community-based annotation and mining of the rapidly accumulated functional genomics resources, we have initiated an international consortium and present a comprehensive, multi-omics resource database named Nannochloropsis Design and Synthesis (NanDeSyn; http://nandesyn.single-cell.cn). Via the Tripal toolkit, it featured user friendly interfaces hosting genomic resources with gene annotations, and transcriptomic and proteomic data for six Nannochloropsis species, including two updated genomes of N. oceanica IMET1 and N. salina CCMP 1776. Toolboxes for search, Blast, synteny view, enrichment analysis, metabolic pathway analysis, genome browser, etc. were also included. In addition, functional validation of genes was indicated based on phenotypes of mutants and relevant bibliography. Furthermore, epigenomic resources were also incorporated, especially for small RNA-Seq including miRNAs and circRNAs. |
| Year founded: | 2020 |
| Last update: | 2020-10-25 |
| Version: | 1.0 |
| Accessibility: |
Accessible
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| Country/Region: | China |
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| Major species: | |
| Keywords: |
| University/Institution: | Qingdao Institute of BioEnergy and Bioprocess Technology, Chinese Academy of Sciences |
| Address: | Single‐Cell Center, CAS Key Laboratory of Biofuels and Shandong Key Laboratory of Energy Genetics and Shandong Institute of Energy Research, Qingdao Institute of BioEnergy and Bioprocess Technology (QIBEBT), Chinese Academy of Sciences, Qingdao, Shandong 266101, China |
| City: | Qingdao |
| Province/State: | Shandong |
| Country/Region: | China |
| Contact name (PI/Team): | Jian Xu |
| Contact email (PI/Helpdesk): | xujian@qibebt.ac.cn |
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The NanDeSyn Database for Nannochloropsis systems and synthetic biology. [PMID: 33103271]
The unicellular industrial oleaginous microalgae Nannochloropsis spp. are model organisms for microalgal systems and synthetic biology. To facilitate community-based annotation and mining of the rapidly accumulated functional genomics resources, we have initiated an international consortium and present a comprehensive, multi-omics resource database named Nannochloropsis Design and Synthesis (NanDeSyn; http://nandesyn.single-cell.cn). Via the Tripal toolkit, it featured user friendly interfaces hosting genomic resources with gene annotations, and transcriptomic and proteomic data for six Nannochloropsis species, including two updated genomes of N. oceanica IMET1 and N. salina CCMP 1776. Toolboxes for search, Blast, synteny view, enrichment analysis, metabolic pathway analysis, genome browser, etc. were also included. In addition, functional validation of genes was indicated based on phenotypes of mutants and relevant bibliography. Furthermore, epigenomic resources were also incorporated, especially for small RNA-Seq including miRNAs and circRNAs. Such comprehensive and integrated landscapes of Nannochloropsis genomics and epigenomics will promote and accelerate community efforts in systems and synthetic biology of these industrially important microalgae. |