Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

MSK-KP

General information

URL: http://mskkp.org
Full name: Musculoskeletal Knowledge Portal
Description: Musculoskeletal Knowledge Portal (MSK-KP), an open-access resource that aggregates, integrates, analyzes, and displays 'omic results relevant to musculoskeletal traits and diseases. The MSK-KP will facilitate and accelerate musculoskeletal disease research by comprehensively amassing and distilling "big data" to make them accessible to all researchers.
Year founded: 2020
Last update:
Version:
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Hinda and Arthur Marcus Institute for Aging Research
Address:
City:
Province/State:
Country/Region: United States
Contact name (PI/Team): Douglas P Kiel
Contact email (PI/Helpdesk): kiel@hsl.harvard.edu

Publications

32777102
The Musculoskeletal Knowledge Portal: Making Omics Data Useful to the Broader Scientific Community. [PMID: 32777102]
Douglas P Kiel, John P Kemp, Fernando Rivadeneira, Jennifer J Westendorf, David Karasik, Emma L Duncan, Yuuki Imai, Ralph Müller, Jason Flannick, Lynda Bonewald, Noël Burtt

The development of high-throughput genotyping technologies and large biobank collections, complemented with rapid methodological advances in statistical genetics, has enabled hypothesis-free genome-wide association studies (GWAS), which have identified hundreds of genetic variants across many loci associated with musculoskeletal conditions. Similarly, basic scientists have valuable molecular cellular and animal data based on musculoskeletal disease that would be enhanced by being able to determine the human translation of their findings. By integrating these large-scale human genomic musculoskeletal datasets with complementary evidence from model organisms, new and existing genetic loci can be statistically fine-mapped to plausibly causal variants, candidate genes, and biological pathways. Genes and pathways identified using this approach can be further prioritized as drug targets, including side-effect profiling and the potential for new indications. To bring together these big data, and to realize the vision of creating a knowledge portal, the International Federation of Musculoskeletal Research Societies (IFMRS) established a working group to collaborate with scientists from the Broad Institute to create the Musculoskeletal Knowledge Portal (MSK-KP)(http://mskkp.org/). The MSK consolidates omics datasets from humans, cellular experiments, and model organisms into a central repository that can be accessed by researchers. The vision of the MSK-KP is to enable better understanding of the biological mechanisms underlying musculoskeletal disease and apply this knowledge to identify and develop new disease interventions. © 2020 American Society for Bone and Mineral Research (ASBMR).

J. Bone Miner. Res.. 2020:35(9) | 25 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
2468/6895 (64.22%)
Genotype phenotype and variation:
363/1005 (63.98%)
2468
Total Rank
24
Citations
4.8
z-index

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Record metadata

Created on: 2020-11-09
Curated by:
Lina Ma [2020-11-25]
Xiaonan Liu [2020-11-25]
Ming Chen [2020-11-09]