Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

TransCirc

General information

URL: https://www.biosino.org/transcirc
Full name: Database of translatable circular RNAs and their translation products
Description: TransCirc 2.0 is a multi-species database for evaluating the translation potential of circular RNAs, covering more than 2.8 million circRNAs across 10 vertebrate species. It integrates full-length circRNA sequences with multi-level translation evidence and annotations of putative translation products, including degron-associated properties and potential MHC-I presentation.
Year founded: 2021
Last update: 2026-09-15
Version: 2.0
Accessibility:
Accessible
Country/Region: China

Contact information

University/Institution: Shanghai Institute of Nutrition and Health, Chinese Academy of Sciences
Address:
City: Shanghai
Province/State: Shanghai
Country/Region: China
Contact name (PI/Team): Guoqing Zhang
Contact email (PI/Helpdesk): wangzefeng@picb.ac.cn

Publications

33074314
TransCirc: an interactive database for translatable circular RNAs based on multi-omics evidence. [PMID: 33074314]
Huang W, Ling Y, Zhang S, Xia Q, Cao R, Fan X, Fang Z, Wang Z, Zhang G.

TransCirc (https://www.biosino.org/transcirc/) is a specialized database that provide comprehensive evidences supporting the translation potential of circular RNAs (circRNAs). This database was generated by integrating various direct and indirect evidences to predict coding potential of each human circRNA and the putative translation products. Seven types of evidences for circRNA translation were included: (i) ribosome/polysome binding evidences supporting the occupancy of ribosomes onto circRNAs; (ii) experimentally mapped translation initiation sites on circRNAs; (iii) internal ribosome entry site on circRNAs; (iv) published N-6-methyladenosine modification data in circRNA that promote translation initiation; (v) lengths of the circRNA specific open reading frames; (vi) sequence composition scores from a machine learning prediction of all potential open reading frames; (vii) mass spectrometry data that directly support the circRNA encoded peptides across back-splice junctions. TransCirc provides a user-friendly searching/browsing interface and independent lines of evidences to predicte how likely a circRNA can be translated. In addition, several flexible tools have been developed to aid retrieval and analysis of the data. TransCirc can serve as an important resource for investigating the translation capacity of circRNAs and the potential circRNA-encoded peptides, and can be expanded to include new evidences or additional species in the future.

Nucleic Acids Res. 2021:49(D1) | 117 Citations (from Europe PMC, 2026-10-24)

Ranking

All databases:
745/7147 (89.59%)
Modification:
42/382 (89.267%)
Structure:
97/1007 (90.467%)
745
Total Rank
117
Citations
23.4
z-index

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Record metadata

Created on: 2020-11-09
Curated by:
Yunchao Ling [2026-10-22]
Dong Zou [2020-12-08]
Xiaonan Liu [2020-11-26]
Xiaonan Liu [2020-11-25]
Chang Liu [2020-11-09]