Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

CRISP-view

General information

URL: http://crispview.weililab.org/
Full name: Database of CRISPR Screen Data
Description: A database of functional genetic screens spanning multiple phenotypes.
Year founded: 2021
Last update:
Version:
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
RNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: George Washington University
Address: 111 Michigan Ave NW, Washington, DC 20010, USA.
City:
Province/State:
Country/Region: United States
Contact name (PI/Team): Wei Li
Contact email (PI/Helpdesk): wli2@childrensnational.org

Publications

33010154
CRISP-view: a database of functional genetic screens spanning multiple phenotypes. [PMID: 33010154]
Cui Y, Cheng X, Chen Q, Song B, Chiu A, Gao Y, Dawson T, Chao L, Zhang W, Li D, Zeng Z, Yu J, Li Z, Fei T, Peng S, Li W.

High-throughput genetic screening based on CRISPR/Cas9 or RNA-interference (RNAi) enables the exploration of genes associated with the phenotype of interest on a large scale. The rapid accumulation of public available genetic screening data provides a wealth of knowledge about genotype-to-phenotype relationships and a valuable resource for the systematic analysis of gene functions. Here we present CRISP-view, a comprehensive database of CRISPR/Cas9 and RNAi screening datasets that span multiple phenotypes, including in vitro and in vivo cell proliferation and viability, response to cancer immunotherapy, virus response, protein expression, etc. By 22 September 2020, CRISP-view has collected 10 321 human samples and 825 mouse samples from 167 papers. All the datasets have been curated, annotated, and processed by a standard MAGeCK-VISPR analysis pipeline with quality control (QC) metrics. We also developed a user-friendly webserver to visualize, explore, and search these datasets. The webserver is freely available at http://crispview.weililab.org.

Nucleic Acids Res. 2021:49(D1) | 18 Citations (from Europe PMC, 2026-08-22)

Ranking

All databases:
3109/7269 (57.243%)
Literature:
276/607 (54.695%)
3109
Total Rank
18
Citations
3.6
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Related Databases

Citing
Cited by

Record metadata

Created on: 2021-11-15
Curated by:
Lin Liu [2021-11-15]