| URL: | https://coconut.naturalproducts.net |
| Full name: | Collection of Open Natural Products database |
| Description: | Natural Products Online is an open source project for Natural Products (NPs) storage, search and analysis. The present version hosts COCONUT, the COlleCtion of Open Natural ProdUcTs, one of the biggest and best annotated resources for NPs available free of charge and without any restriction. |
| Year founded: | 2021 |
| Last update: | 2022-01 |
| Version: | |
| Accessibility: |
Accessible
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| Country/Region: | Germany |
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| University/Institution: | University Friedrich-Schiller in Jena |
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| Country/Region: | Germany |
| Contact name (PI/Team): | Maria Sorokina |
| Contact email (PI/Helpdesk): | maria.sorokina@uni-jena.de |
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COCONUT 2.0: a comprehensive overhaul and curation of the collection of open natural products database. [PMID: 39588778]
The COCONUT (COlleCtion of Open Natural prodUcTs) database was launched in 2021 as an aggregation of openly available natural product datasets and has been one of the biggest open natural product databases since. Apart from the chemical structures of natural products, COCONUT contains information about names and synonyms, species and organism parts in which the natural product has been found, geographic information about where the respective sample has been collected and literature references, where available. COCONUT is openly accessible at https://coconut.naturalproducts.net. Users can search textual information and perform structure, substructure, and similarity searches. The data in COCONUT are available for bulk download as SDF, CSV and a database dump. The web application for accessing the data is open-source. Here, we describe COCONUT 2.0, for which the web application has been completely rewritten, and the data have been newly assembled and extensively curated. New features include data submissions by users and community curation facilitated in various ways. |
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COCONUT online: Collection of Open Natural Products database. [PMID: 33423696]
Natural products (NPs) are small molecules produced by living organisms with potential applications in pharmacology and other industries as many of them are bioactive. This potential raised great interest in NP research around the world and in different application fields, therefore, over the years a multiplication of generalistic and thematic NP databases has been observed. However, there is, at this moment, no online resource regrouping all known NPs in just one place, which would greatly simplify NPs research and allow computational screening and other in silico applications. In this manuscript we present the online version of the COlleCtion of Open Natural prodUcTs (COCONUT): an aggregated dataset of elucidated and predicted NPs collected from open sources and a web interface to browse, search and easily and quickly download NPs. COCONUT web is freely available at https://coconut.naturalproducts.net . |