Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

TE Hub

General information

URL: https://tehub.org
Full name:
Description: TE Hub is an open and collaborative platform, providing an entry point and reference site for researchers interested in Transposable Element (TE) diversity, identification, and annotation.
Year founded: 2021
Last update:
Version:
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: University of Montana
Address: Department of Computer Science, University of Montana, Missoula, MT, USA.
City:
Province/State:
Country/Region: United States
Contact name (PI/Team): Travis J Wheeler
Contact email (PI/Helpdesk): Travis.Wheeler@umontana.edu

Publications

34154643
TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation. [PMID: 34154643]
null null, Tyler A Elliott, Tony Heitkam, Robert Hubley, Hadi Quesneville, Alexander Suh, Travis J Wheeler

Transposable elements (TEs) play powerful and varied evolutionary and functional roles, and are widespread in most eukaryotic genomes. Research into their unique biology has driven the creation of a large collection of databases, software, classification systems, and annotation guidelines. The diversity of available TE-related methods and resources raises compatibility concerns and can be overwhelming to researchers and communicators seeking straightforward guidance or materials. To address these challenges, we have initiated a new resource, TE Hub, that provides a space where members of the TE community can collaborate to document and create resources and methods. The space consists of (1) a website organized with an open wiki framework,  https://tehub.org , (2) a conversation framework via a Twitter account and a Slack channel, and (3) bi-monthly Hub Update video chats on the platform's development. In addition to serving as a centralized repository and communication platform, TE Hub lays the foundation for improved integration, standardization, and effectiveness of diverse tools and protocols. We invite the TE community, both novices and experts in TE identification and analysis, to join us in expanding our community-oriented resource.

Mob DNA. 2021:12(1) | 21 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
2567/6895 (62.785%)
Gene genome and annotation:
806/2021 (60.168%)
2567
Total Rank
18
Citations
4.5
z-index

Community reviews

Not Rated
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Related Databases

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Record metadata

Created on: 2022-04-19
Curated by:
Lin Liu [2022-08-03]
Lin Liu [2022-06-10]
Qianpeng Li [2022-05-15]
Jing Wei [2022-04-19]