Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

RiceSRTFDB

General information

URL: http://www.nipgr.res.in/RiceSRTFDB.html
Full name: Rice Stress-Responsive Transcription Factor Database
Description: a database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis
Year founded: 2013
Last update: 2013-01-01
Version: v1.0
Accessibility:
Unaccessible
Country/Region: India

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: National Institute of Plant Genome Research
Address: Marg,New Delhi 110067,India
City: New Delhi
Province/State:
Country/Region: India
Contact name (PI/Team): Mukesh Jain
Contact email (PI/Helpdesk): mjain@nipgr.ac.in

Publications

23660286
RiceSRTFDB: a database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis. [PMID: 23660286]
Priya P, Jain M.

Rice is one of the most important crop plants, representing the staple food for more than half the world's population. However, its productivity is challenged by various stresses, including drought and salinity. Transcription factors (TFs) represent a regulatory component of the genome and are the most important targets for engineering stress tolerance. Here, we constructed a database, RiceSRTFDB, which provides comprehensive expression information for rice TFs during drought and salinity stress conditions and various stages of development. This information will be useful to identify the target TF(s) involved in stress response at a particular stage of development. The curated information for cis-regulatory elements present in their promoters has also been provided, which will be important to study the binding proteins. In addition, we have provided the available mutants and their phenotype information for rice TFs. All these information have been integrated in the database to facilitate the selection of target TFs of interest for functional analysis. This database aims to accelerate functional genomics research of rice TFs and understand the regulatory mechanisms underlying abiotic stress responses. Database URL: http://www.nipgr.res.in/RiceSRTFDB.html

Database (Oxford). 2013:2013() | 33 Citations (from Europe PMC, 2026-04-04)

Ranking

All databases:
3504/6932 (49.466%)
Gene genome and annotation:
1088/2039 (46.69%)
3504
Total Rank
32
Citations
2.462
z-index

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Record metadata

Created on: 2015-06-20
Curated by:
Yuanyuan Cheng [2024-01-04]
Lina Ma [2018-07-04]
Lin Xia [2016-04-01]
Lina Ma [2016-03-31]
Mengwei Li [2016-02-20]
Lin Xia [2015-11-23]
Lin Xia [2015-06-26]