Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

PlasticDB

General information

URL: http://plasticdb.org
Full name:
Description: PlasticDB is a database of microorganisms and proteins linked to plastic biodegradation.
Year founded: 2022
Last update:
Version:
Accessibility:
Accessible
Country/Region: New Zealand

Classification & Tag

Data type:
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: University of Auckland
Address:
City:
Province/State:
Country/Region: New Zealand
Contact name (PI/Team): plasticdb
Contact email (PI/Helpdesk): contact.plasticdb@gmail.com

Publications

35266524
PlasticDB: a database of microorganisms and proteins linked to plastic biodegradation. [PMID: 35266524]
Victor Gambarini, Olga Pantos, Joanne M Kingsbury, Louise Weaver, Kim M Handley, Gavin Lear

The number of publications reporting putative plastic-degrading microbes and proteins is continuously increasing, necessitating the compilation of these data and the development of tools to facilitate their analysis. We developed the PlasticDB web application to address this need, which comprises a database of microorganisms and proteins reported to biodegrade plastics. Associated metadata, such as the techniques utilized to assess biodegradation, the environmental source of microbial isolate and presumed thermophilic traits are also reported. Proteins in the database are categorized according to the plastic type they are reported to degrade. Each protein structure has been predicted in silico and can be visualized or downloaded for further investigation. In addition to standard database functionalities, such as searching, filtering and retrieving database records, we implemented several analytical tools that accept inputs, including gene, genome, metagenome, transcriptomes, metatranscriptomes and taxa table data. Users can now analyze their datasets for the presence of putative plastic-degrading species and potential plastic-degrading proteins and pathways from those species. Database URL:http://plasticdb.org.

Database (Oxford). 2022:2022() | 112 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
464/6895 (93.285%)
Metadata:
47/719 (93.602%)
464
Total Rank
102
Citations
34
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Record metadata

Created on: 2022-04-24
Curated by:
Lin Liu [2022-08-16]
Lina Ma [2022-06-01]
sun yongqing [2022-05-14]
Qianpeng Li [2022-04-24]