Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

The Human Proteoform Atlas

General information

URL: http://human-proteoform-atlas.org
Full name: The Human Proteoform Atlas
Description: The Human Proteoform Atlas is a web-based repository of experimentally verified human proteoforms on-line at and is a direct descendant of the Consortium of Top-Down Proteomics' Proteoform Atlas.
Year founded: 2022
Last update:
Version:
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
Data object:
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Major species:
Keywords:

Contact information

University/Institution: Northwestern University
Address:
City:
Province/State:
Country/Region: United States
Contact name (PI/Team): Neil L Kelleher
Contact email (PI/Helpdesk): n-kelleher@northwestern.edu

Publications

34986596
The Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms. [PMID: 34986596]
Michael A R Hollas, Matthew T Robey, Ryan T Fellers, Richard D LeDuc, Paul M Thomas, Neil L Kelleher

The Human Proteoform Atlas (HPfA) is a web-based repository of experimentally verified human proteoforms on-line at http://human-proteoform-atlas.org and is a direct descendant of the Consortium of Top-Down Proteomics' (CTDP) Proteoform Atlas. Proteoforms are the specific forms of protein molecules expressed by our cells and include the unique combination of post-translational modifications (PTMs), alternative splicingĀ and other sources of variation deriving from a specific gene. The HPfA uses a FAIR system to assign persistent identifiers to proteoforms which allows for redundancy calling and tracking from prior and future studies in the growing community of proteoform biology and measurement. The HPfA is organized around open ontologies and enables flexible classification of proteoforms. To achieve this, a public registry of experimentally verified proteoforms was also created. Submission of new proteoforms can be processed through email vianrtdphelp@northwestern.edu, and future iterations of these proteoform atlases will help to organize and assign function to proteoforms, their PTMs and their complexes in the years ahead.

Nucleic Acids Res. 2022:50(D1) | 25 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
1892/6895 (72.574%)
Gene genome and annotation:
591/2021 (70.807%)
Expression:
386/1347 (71.418%)
1892
Total Rank
21
Citations
7
z-index

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Record metadata

Created on: 2022-04-24
Curated by:
Lina Ma [2022-06-01]
sun yongqing [2022-05-14]
Pei Liu [2022-04-24]