Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

SorghumBase

General information

URL: https://www.sorghumbase.org
Full name:
Description: SorghumBase is a web-based portal for sorghum genetic information and community advancement.The website is a resource for the sorghum research community. SorghumBase hosts a wide range of sorghum genomic information in a modular framework, built with open-source software, to provide a sustainable platform.
Year founded: 2022
Last update:
Version:
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Cornell University
Address: Cold Spring Harbor Laboratory, Williams Building, 1 Bungtown Road, Cold Spring Harbor, NY, 11724
City:
Province/State:
Country/Region: United States
Contact name (PI/Team): Doreen Ware
Contact email (PI/Helpdesk): ude.lhsc@eraw

Publications

35015132
SorghumBase: a web-based portal for sorghum genetic information and community advancement. [PMID: 35015132]
Nicholas Gladman, Andrew Olson, Sharon Wei, Kapeel Chougule, Zhenyuan Lu, Marcela Tello-Ruiz, Ivar Meijs, Peter Van Buren, Yinping Jiao, Bo Wang, Vivek Kumar, Sunita Kumari, Lifang Zhang, John Burke, Junping Chen, Gloria Burow, Chad Hayes, Yves Emendack, Zhanguo Xin, Doreen Ware

MAIN CONCLUSION: SorghumBase provides a community portal that integrates genetic, genomic, and breeding resources for sorghum germplasm improvement. Public research and development in agriculture rely on proper data and resource sharing within stakeholder communities. For plant breeders, agronomists, molecular biologists, geneticists, and bioinformaticians, centralizing desirable data into a user-friendly hub for crop systems is essential for successful collaborations and breakthroughs in germplasm development. Here, we present the SorghumBase web portal ( https://www.sorghumbase.org ), a resource for the sorghum research community. SorghumBase hosts a wide range of sorghum genomic information in a modular framework, built with open-source software, to provide a sustainable platform. This initial release of SorghumBase includes: (1) five sorghum reference genome assemblies in a pan-genome browser; (2) genetic variant information for natural diversity panels and ethyl methanesulfonate (EMS)-induced mutant populations; (3) search interface and integrated views of various data types; (4) links supporting interconnectivity with other repositories including genebank, QTL, and gene expression databases; and (5) a content management system to support access to community news and training materials. SorghumBase offers sorghum investigators improved data collation and access that will facilitate the growth of a robust research community to support genomics-assisted breeding.

Planta. 2022:255(2) | 32 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
1469/6895 (78.709%)
Gene genome and annotation:
476/2021 (76.497%)
Genotype phenotype and variation:
219/1005 (78.308%)
1469
Total Rank
28
Citations
9.333
z-index

Community reviews

Not Rated
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Record metadata

Created on: 2022-04-24
Curated by:
Lina Ma [2022-05-26]
sun yongqing [2022-05-15]
Pei Liu [2022-04-24]