Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

PlantGF

General information

URL: http://biodb.sdau.edu.cn/PGF/index
Full name: The Plant Gene Family Platform
Description: The Plant Gene Family Platform (PlantGF) is composed of four main parts: Search, Tools, Statistics and Auxiliary. A total of 2 909 580 gene family members were identified from 138 plant species in PlantGF. The data can be queried in the Search section through a user-friendly interface.
Year founded: 2022
Last update:
Version:
Accessibility:
Unaccessible
Country/Region: China

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Shandong Agricultural University
Address:
City:
Province/State:
Country/Region: China
Contact name (PI/Team): Heng Tang
Contact email (PI/Helpdesk): lyang@sdau.edu.cn

Publications

35134149
PlantGF: an analysis and annotation platform for plant gene families. [PMID: 35134149]
Jiaxuan Li, Shuai Yang, Xiaojie Yang, Hui Wu, Heng Tang, Long Yang

Gene families contain genes that come from the same ancestor and have similar sequences and structures. They perform certain specific functions within and among different species. Currently, there is no complete process or platform for the rapid analysis of plant gene families. In this study, a comprehensive query and analysis platform of plant gene families, the Plant Gene Family Platform (PlantGF), was constructed. The platform is composed of four main parts: Search, Tools, Statistics and Auxiliary. A total of 2 909 580 gene family members were identified from 138 plant species in PlantGF. The data can be queried in the Search section through a user-friendly interface. A general process for gene family analysis, having nine steps, is provided. The platform also includes four online tools (HMM-Search, BLAST, MAFFT and HMMER) in the Tools section for useful additional analyses. The statistical analysis of the relevant gene families is shown on the Statistics page. Auxiliary pages are provided for data downloading. The datasets for all 138 plant species' protein sequences and their gene families can be acquired on the Download page. A user's manual and some useful links are displayed on the Manual and Links pages, respectively. To the best of our knowledge, PlantGF is the first comprehensive platform for studying plant gene families, and it will make important contributions to plant gene family-related research. Database URL: http://biodb.sdau.edu.cn/PGF/index.html.

Database (Oxford). 2022:2022() | 10 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
3111/6895 (54.895%)
Gene genome and annotation:
971/2021 (52.004%)
Phylogeny and homology:
142/302 (53.311%)
3111
Total Rank
10
Citations
3.333
z-index

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Record metadata

Created on: 2022-04-25
Curated by:
Lina Ma [2022-05-31]
sun yongqing [2022-05-15]
Qianpeng Li [2022-04-25]