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Database Commons

a catalog of worldwide biological databases

Database Profile

ncFO

General information

URL: http://www.jianglab.cn/ncFO/
Full name: ncRNA-ferroptosis association database
Description: ncFO is the first platform to collect experimentally verified ferroptosis-associated ncRNAs and predict candidate ncRNA–ferroptosis associations. ncFO contains 90 experimentally verified entries, and 3,260 predicted entries by regulation, as well as 2,592,661 predicted entries by ncRNA–ferroptosis gene co-expression in more than 8,000 samples across 20 cancer types. ncFO also provides survival analysis and differential expression analysis for ncRNAs.
Year founded: 2022
Last update: 2023-01
Version: v1.0
Accessibility:
Accessible
Country/Region: China

Classification & Tag

Data type:
RNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Nanjing University of Aeronautics and Astronautics
Address: Department of Biomedical Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing 211106, China
City: Nanjing
Province/State: Jiangsu
Country/Region: China
Contact name (PI/Team): Wei Jiang
Contact email (PI/Helpdesk): weijiang@nuaa.edu.cn

Publications

36162726
ncFO: A Comprehensive Resource of Curated and Predicted ncRNAs Associated with Ferroptosis. [PMID: 36162726]
Zhou S, Huang YE, Xing J, Zhou X, Chen S, Chen J, Wang L, Jiang W.

Ferroptosis is a form of regulated cell death driven by the accumulation of lipid hydroperoxides. Regulation of ferroptosis might be beneficial to cancer treatment. Non-coding RNAs (ncRNAs) are a class of RNA transcripts that generally cannot encode proteins and have been demonstrated to play critical roles in regulating ferroptosis. Herein, we developed ncFO, the ncRNA-ferroptosis association database, to document the manually curated and predicted ncRNAs that are associated with ferroptosis. Collectively, ncFO contains 90 experimentally verified entries, including 46 microRNAs (miRNAs), 21 long non-coding RNAs (lncRNAs), and 17 circular RNAs (circRNAs). In addition, ncFO also incorporates two online prediction tools based on the regulation and co-expression of ncRNA and ferroptosis genes. Using default parameters, we obtained 3260 predicted entries, including 598 miRNAs and 178 lncRNAs, by regulation, as well as 2,592,661 predicted entries, including 967 miRNAs and 9632 lncRNAs, by ncRNA-ferroptosis gene co-expression in more than 8000 samples across 20 cancer types. The detailed information of each entry includes ncRNA name, disease, species, tissue, target, regulation, publication time, and PubMed identifier (PMID). ncFO also provides survival analysis and differential expression analysis for ncRNAs. In summary, ncFO offers a user-friendly platform to search and predict ferroptosis-associated ncRNAs, which might facilitate research on ferroptosis and discover potential targets for cancer treatment. ncFO can be accessed at http://www.jianglab.cn/ncFO/.

Genomics Proteomics Bioinformatics. 2022:() | 6 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
4069/6895 (41.001%)
Genotype phenotype and variation:
587/1005 (41.692%)
Expression:
834/1347 (38.159%)
4069
Total Rank
6
Citations
2
z-index

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Record metadata

Created on: 2023-02-21
Curated by:
Xinyu Zhou [2023-09-19]
Lina Ma [2023-03-10]
Lina Ma [2023-02-27]
Xinyu Zhou [2023-02-21]