Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

RiceLncPedia

General information

URL: http://3dgenome.hzau.edu.cn/RiceLncPedia
Full name: a curated knowledgebase of rice long non-coding RNAs
Description: RiceLncPedia is a curated knowledgebase of rice lncRNAs that identified from over 2000 publically available RNA-Seq libraries. RiceLncPedia integrates genome variation, lncRNA-miRNA interaction, the precursors of miRNAs, transposable elements (TE) related lncRNAs and the association of lncRNAs with agricultural traits. The current version of RiceLncPedia houses 6,965 rice lncRNAs, and provides expression profiles across 2,312 RNA-seq libraries.
Year founded: 2021
Last update: 2021
Version: v1.0
Accessibility:
Accessible
Country/Region: China

Classification & Tag

Data type:
RNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Huazhong Agricultural University
Address: College of Informatics, Huazhong Agricultural University, Wuhan 430070, China
City: Wuhan
Province/State: Hubei
Country/Region: China
Contact name (PI/Team): Guoliang Li
Contact email (PI/Helpdesk): guoliang.li@mail.hzau.edu.cn

Publications

34038032
RiceLncPedia: a comprehensive database of rice long non-coding RNAs. [PMID: 34038032]
Zhang Z, Xu Y, Yang F, Xiao B, Li G.
Plant Biotechnol J. 2021:19(8) | 20 Citations (from Europe PMC, 2026-05-09)

Ranking

All databases:
2668/6932 (61.526%)
Gene genome and annotation:
829/2041 (59.432%)
2668
Total Rank
19
Citations
3.8
z-index

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Record metadata

Created on: 2023-02-22
Curated by:
Yuanyuan Cheng [2024-01-04]
Yuanyuan Cheng [2024-01-03]
Xinyu Zhou [2023-09-19]
Lina Ma [2023-02-27]
Xinyu Zhou [2023-02-22]