Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

RiceENCODE

General information

URL: http://glab.hzau.edu.cn/RiceENCODE/index.html
Full name: rice Encyclopedia of DNA Elements
Description: RiceENCODE is a comprehensive rice Encyclopedia of DNA Elements database. It serves as an important platform for studying rice molecular breeding, genetic mechanisms, tissue specificities and subgroup properties in epigenetic regulation. By combining the published three-dimensional interactive data ChIA-PET, Hi-C and the epigenomic datasets (ChIP-Seq, ATAC-Seq,MNase-Seq, FAIRE-Seq, WGBS, RNA-Seq), RiceENCODE houses a wealth of information regarding rice epigenomics. The current version contains 694 datasets.
Year founded: 2021
Last update: 2021
Version: v1
Accessibility:
Unaccessible
Country/Region: China

Funding support

  • 2016YFD0100904
  • 2018YFC1604000
  • 31771422
  • 31771402
  • 31701163

Classification & Tag

Data type:
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Huazhong Agricultural University
Address:
City: Wuhan
Province/State: Hubei
Country/Region: China
Contact name (PI/Team): Guoliang Li
Contact email (PI/Helpdesk): guoliang.li@mail.hzau.edu.cn

Publications

34455096
RiceENCODE: A comprehensive epigenomic database as a rice Encyclopedia of DNA Elements. [PMID: 34455096]
Xie L, Liu M, Zhao L, Cao K, Wang P, Xu W, Sung WK, Li X, Li G.
Mol Plant. 2021:14(10) | 34 Citations (from Europe PMC, 2026-03-28)

Ranking

All databases:
1862/6932 (73.153%)
Modification:
104/338 (69.527%)
Structure:
259/972 (73.457%)
Interaction:
360/1200 (70.083%)
1862
Total Rank
32
Citations
6.4
z-index

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Record metadata

Created on: 2023-06-14
Curated by:
Yuanyuan Cheng [2023-09-20]
Lina Ma [2023-06-14]
Qiangwei Zhou [2023-06-14]