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Database Commons

a catalog of worldwide biological databases

Database Profile

GROP

General information

URL: http://grop.site
Full name: Genomic Repository of Oil Plants
Description: The current version of GROP integrates the coding sequences, protein sequences, genome structure, functional annotation information and other information from 18 species, 22 genome assembly, and 46 transcriptomes. Additionally, GROP owns BLAST, genome browser, enrichment tool, and a range of efficient search tools.
Year founded: 2020
Last update:
Version:
Accessibility:
Accessible
Country/Region: China

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Contact information

University/Institution: Zhejiang A&F University
Address:
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Country/Region: China
Contact name (PI/Team): Zhengjia Wang
Contact email (PI/Helpdesk): wzhj21@163.com

Publications

36275551
GROP: A genomic information repository for oilplants. [PMID: 36275551]
Wenlei Guo, Hongmiao Jin, Junhao Chen, Jianqin Huang, Dingwei Zheng, Zhitao Cheng, Xinyao Liu, Zhengfu Yang, Fei Chen, Kean-Jin Lim, Zhengjia Wang

Biomass energy is an essential component of the agriculture economy and represents an important and particularly significant renewable energy source in the fight against fossil fuel depletion and global warming. The recognition that many plants naturally synthesize hydrocarbons makes these oil plants indispensable resources for biomass energy, and the advancement of next-generation sequencing technology in recent years has now made available mountains of data on plants that synthesize oil. We have utilized a combination of bioinformatic protocols to acquire key information from this massive amount of genomic data and to assemble it into an oil plant genomic information repository, built through website technology, including Django, Bootstrap, and echarts, to create the Genomic Information Repository for Oil Plants (GROP) portal (http://grop.site/) for genomics research on oil plants. The current version of GROP integrates the coding sequences, protein sequences, genome structure, functional annotation information, and other information from 18 species, 22 genome assemblies, and 46 transcriptomes. GROP also provides BLAST, genome browser, functional enrichment, and search tools. The integration of the massive amounts of oil plant genomic data with key bioinformatics tools in a database with a user-friendly interface allows GROP to serve as a central information repository to facilitate studies on oil plants by researchers worldwide.

Front Plant Sci. 2022:13() | 1 Citations (from Europe PMC, 2025-12-13)

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Record metadata

Created on: 2023-08-22
Curated by:
Yuanyuan Cheng [2023-09-11]
Yuxin Qin [2023-09-05]
Yuanyuan Cheng [2023-08-22]