Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

CREAMMIST

General information

URL: https://creammist.mtms.dev
Full name:
Description: CREAMMIST is an integrated cancer drug sensitivity database for in vitro pharmacogenomics analysis, providing an integrative dose-response curve across five widely used cancer cell-line drug-response datasets (CCLE, GDSC1, GDSC2, CTRP1, CTRP2).
Year founded: 2023
Last update:
Version:
Accessibility:
Accessible
Country/Region: Singapore

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Contact information

University/Institution: Genome Institute of Singapore
Address:
City:
Province/State:
Country/Region: Singapore
Contact name (PI/Team): Chayaporn Suphavilai
Contact email (PI/Helpdesk): suphavilaic@gis.a-star.edu.sg

Publications

36259664
CREAMMIST: an integrative probabilistic database for cancer drug response prediction. [PMID: 36259664]
Hatairat Yingtaweesittikul, Jiaxi Wu, Aanchal Mongia, Rafael Peres, Karrie Ko, Niranjan Nagarajan, Chayaporn Suphavilai

Extensive in vitro cancer drug screening datasets have enabled scientists to identify biomarkers and develop machine learning models for predicting drug sensitivity. While most advancements have focused on omics profiles, cancer drug sensitivity scores precalculated by the original sources are often used as-is, without consideration for variabilities between studies. It is well-known that significant inconsistencies exist between the drug sensitivity scores across datasets due to differences in experimental setups and preprocessing methods used to obtain the sensitivity scores. As a result, many studies opt to focus only on a single dataset, leading to underutilization of available data and a limited interpretation of cancer pharmacogenomics analysis. To overcome these caveats, we have developed CREAMMIST (https://creammist.mtms.dev), an integrative database that enables users to obtain an integrative dose-response curve, to capture uncertainty (or high certainty when multiple datasets well align) across five widely used cancer cell-line drug-response datasets. We utilized the Bayesian framework to systematically integrate all available dose-response values across datasets (>14 millions dose-response data points). CREAMMIST provides easy-to-use statistics derived from the integrative dose-response curves for various downstream analyses such as identifying biomarkers, selecting drug concentrations for experiments, and training robust machine learning models.

Nucleic Acids Res. 2023:51(D1) | 10 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
2378/6895 (65.526%)
Health and medicine:
588/1738 (66.226%)
2378
Total Rank
10
Citations
5
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Record metadata

Created on: 2023-08-22
Curated by:
Yuanyuan Cheng [2023-09-11]
Yuxin Qin [2023-09-05]
Yuanyuan Cheng [2023-08-22]