Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

BPC

General information

URL: https://bovinepangenome.github.io/
Full name: Bovine Pangenome Consortium
Description: The Bovine Pangenome Consortium is an international research consortium dedicated to the sequencing and assembly of bovid species for research applications.
Year founded: 2023
Last update:
Version: v1.0
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: USDA-ARS
Address: Dairy Forage Research Center, USDA-ARS, Madison, WI, 53706, USA.
City: Madison
Province/State:
Country/Region: United States
Contact name (PI/Team): Derek M Bickhart
Contact email (PI/Helpdesk): derek.bickhart@usda.gov

Publications

37337218
The Bovine Pangenome Consortium: democratizing production and accessibility of genome assemblies for global cattle breeds and other bovine species. [PMID: 37337218]
Timothy P L Smith, Derek M Bickhart, Didier Boichard, Amanda J Chamberlain, Appolinaire Djikeng, Yu Jiang, Wai Y Low, Hubert Pausch, Sebastian Demyda-Peyrás, James Prendergast, Robert D Schnabel, Benjamin D Rosen, null null

The Bovine Pangenome Consortium (BPC) is an international collaboration dedicated to the assembly of cattle genomes to develop a more complete representation of cattle genomic diversity. The goal of the BPC is to provide genome assemblies and a community-agreed pangenome representation to replace breed-specific reference assemblies for cattle genomics. The BPC invites partners sharing our vision to participate in the production of these assemblies and the development of a common, community-approved, pangenome reference as a public resource for the research community ( https://bovinepangenome.github.io/ ). This community-driven resource will provide the context for comparison between studies and the future foundation for cattle genomic selection.

Genome Biol. 2023:24(1) | 32 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
1090/6895 (84.206%)
Gene genome and annotation:
356/2021 (82.434%)
Phylogeny and homology:
54/302 (82.45%)
1090
Total Rank
27
Citations
13.5
z-index

Community reviews

Not Rated
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Record metadata

Created on: 2023-08-23
Curated by:
Yuxin Qin [2023-09-12]
Xinyu Zhou [2023-09-08]
Yuxin Qin [2023-08-23]