Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

CoDNaS-Q

General information

URL: http://ufq.unq.edu.ar/codnasq
Full name: a database of conformational diversity of the native state of proteins with quaternary structure
Description: CoDNaS-Q integrates relevant annotations that allow researchers to identify and explore the extent and possible reasons of conformational diversity in homooligomeric protein complexes
Year founded: 2022
Last update: 2022-10-31
Version: 1.0
Accessibility:
Accessible
Country/Region: Argentina

Classification & Tag

Data type:
Data object:
NA
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: Universidad Nacional de Quilmes
Address: Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Buenos Aires B1876BXD, Argentina.
City:
Province/State:
Country/Region: Argentina
Contact name (PI/Team): Nicolas Palopoli
Contact email (PI/Helpdesk): npalopoli@unq.edu.ar

Publications

36111870
CoDNaS-Q: a database of conformational diversity of the native state of proteins with quaternary structure. [PMID: 36111870]
Nahuel Escobedo, Ronaldo Romario Tunque Cahui, Gastón Caruso, Emilio García Ríos, Layla Hirsh, Alexander Miguel Monzon, Gustavo Parisi, Nicolas Palopoli

SUMMARY: A collection of conformers that exist in a dynamical equilibrium defines the native state of a protein. The structural differences between them describe their conformational diversity, a defining characteristic of the protein with an essential role in multiple cellular processes. Since most proteins carry out their functions by assembling into complexes, we have developed CoDNaS-Q, the first online resource to explore conformational diversity in homooligomeric proteins. It features a curated collection of redundant protein structures with known quaternary structure. CoDNaS-Q integrates relevant annotations that allow researchers to identify and explore the extent and possible reasons of conformational diversity in homooligomeric protein complexes.
AVAILABILITY AND IMPLEMENTATION: CoDNaS-Q is freely accessible at http://ufq.unq.edu.ar/codnasq/ or https://codnas-q.bioinformatica.org/home. The data can be retrieved from the website. The source code of the database can be downloaded from https://github.com/SfrRonaldo/codnas-q.

Bioinformatics. 2022:38(21) | 5 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
4813/6895 (30.21%)
Structure:
668/967 (31.024%)
4813
Total Rank
4
Citations
1.333
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Related Databases

Citing
Cited by

Record metadata

Created on: 2023-08-23
Curated by:
Xinyu Zhou [2023-09-12]
Yue Qi [2023-09-05]
Yuanyuan Cheng [2023-08-23]