Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

omicSynth

General information

URL: https://nih-card-ndd-smr-home-syboky.streamlit.app
Full name:
Description: omicSynth identify 116 Alzheimer’s disease, 3 amyotrophic lateral sclerosis, 5 Lewy body dementia, 46 Parkinson’s disease, and 9 Progressive supranuclear palsy target genes passing multiple test corrections.
Year founded: 2023
Last update: 2023
Version: v1.20.0
Accessibility:
Accessible
Country/Region: United States

Contact information

University/Institution: National Institute on Aging
Address: Center for Alzheimer’s and Related Dementias, National Institute on Aging, Intramural Research Program at the National Institutes of Health, Building T44, Bethesda, MD 20892, USA
City:
Province/State:
Country/Region: United States
Contact name (PI/Team): Hampton Leonard
Contact email (PI/Helpdesk): hampton@datatecnica.com

Publications

37090611
omicSynth: an Open Multi-omic Community Resource for Identifying Druggable Targets across Neurodegenerative Diseases. [PMID: 37090611]
Chelsea X Alvarado, Mary B Makarious, Cory A Weller, Dan Vitale, Mathew J Koretsky, Sara Bandres Ciga, Hirotaka Iwaki, Kristin Levine, Andrew Singleton, Faraz Faghri, Mike A Nalls, Hampton Leonard

Treatments for neurodegenerative disorders remain rare, although recent FDA approvals, such as Lecanemab and Aducanumab for Alzheimer's Disease, highlight the importance of the underlying biological mechanisms in driving discovery and creating disease modifying therapies. The global population is aging, driving an urgent need for therapeutics that stop disease progression and eliminate symptoms. In this study, we create an open framework and resource for evidence-based identification of therapeutic targets for neurodegenerative disease. We use Summary-data-based Mendelian Randomization to identify genetic targets for drug discovery and repurposing. In parallel, we provide mechanistic insights into disease processes and potential network-level consequences of gene-based therapeutics. We identify 116 Alzheimer's disease, 3 amyotrophic lateral sclerosis, 5 Lewy body dementia, 46 Parkinson's disease, and 9 Progressive supranuclear palsy target genes passing multiple test corrections (pSMR_multi < 2.95x10-6 and pHEIDI > 0.01). We created a therapeutic scheme to classify our identified target genes into strata based on druggability and approved therapeutics - classifying 41 novel targets, 3 known targets, and 115 difficult targets (of these 69.8% are expressed in the disease relevant cell type from single nucleus experiments). Our novel class of genes provides a springboard for new opportunities in drug discovery, development and repurposing in the pre-competitive space. In addition, looking at drug-gene interaction networks, we identify previous trials that may require further follow-up such as Riluzole in AD. We also provide a user-friendly web platform to help users explore potential therapeutic targets for neurodegenerative diseases, decreasing activation energy for the community [https://nih-card-ndd-smr-home-syboky.streamlit.app/].

medRxiv. 2023:() | 1 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
6148/6895 (10.848%)
Health and medicine:
1556/1738 (10.529%)
6148
Total Rank
1
Citations
0.5
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Related Databases

Citing
Cited by

Record metadata

Created on: 2023-08-28
Curated by:
Yuanyuan Cheng [2023-09-13]
Yuanyuan Cheng [2023-09-05]
Xinyu Zhou [2023-08-28]