Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

PlantMWpIDB

General information

URL: https://plantmwpidb.com
Full name: Database of Plant Molecular Weights and Isoelectric Point of proteome
Description: The PlantMWpIDB database contains the data of plant molecular weight (MW) and isoelectric point (pI) data of 13.829 million protein sequences from 342 plant species. The annotated protein sequences of species from NCBI (National Center for Biotechnological Information), Phytozome, and Uniprot were used to calculate the molecular weight and isoelectric point. From 342 plant species, 147 were from NCBI and Phytozome database, whereas 195 species were from Uniprot database.
Year founded: 2022
Last update: 2022-05-06
Version: v1.0
Accessibility:
Accessible
Country/Region: Korea, Republic of

Classification & Tag

Data type:
Data object:
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: Yeungnam University
Address: Department of Information and Communication Engineering, Yeungnam University, 214-1, Gyeongsan-si, 712-749, South Korea.
City:
Province/State:
Country/Region: Korea, Republic of
Contact name (PI/Team): Gyu Sang Choi
Contact email (PI/Helpdesk): castchoi@ynu.ac.kr

Publications

35523906
PlantMWpIDB: a database for the molecular weight and isoelectric points of the plant proteomes. [PMID: 35523906]
Tapan Kumar Mohanta, Muhammad Shahzad Kamran, Muhammad Omar, Waheed Anwar, Gyu Sang Choi

The molecular weight and isoelectric point of the proteins are very important parameters that control their subcellular localization and subsequent function. Although the genome sequence data of the plant kingdom improved enormously, the proteomic details have been poorly elaborated. Therefore, we have calculated the molecular weight and isoelectric point of the plant proteins and reported them in this database. A database, PlantMWpIDB, containing protein data from 342 plant proteomes was created to provide information on plant proteomes for hypothesis formulation in basic research and for biotechnological applications. The Molecular weight and isoelectric point (pI) are important molecular parameters of proteins that are useful when conducting protein studies involving 2D gel electrophoresis, liquid chromatography-mass spectrometry, and X-ray protein crystallography. PlantMWpIDB provides an easy-to-use and efficient interface for search options and generates a summary of basic protein parameters. The database represents a virtual 2D proteome map of plants, and the molecular weight and pI of a protein can be obtained by searching on the name of a protein, a keyword, or by a list of accession numbers. The PlantMWpIDB database also allows one to query protein sequences. The database can be found in the following link https://plantmwpidb.com/ . The individual 2D virtual proteome map of the plant kingdom will enable us to understand the proteome diversity between different species. Further, the molecular weight and isoelectric point of individual proteins can enable us to understand their functional significance in different species.

Sci Rep. 2022:12(1) | 3 Citations (from Europe PMC, 2026-06-20)

Ranking

All databases:
5581/6932 (19.504%)
Gene genome and annotation:
1667/2040 (18.333%)
Structure:
775/972 (20.37%)
5581
Total Rank
3
Citations
0.75
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Record metadata

Created on: 2023-09-06
Curated by:
Shiting Wang [2024-08-28]
Shiting Wang [2024-08-27]
Xinyu Zhou [2023-10-13]
Jane Young [2023-09-06]