Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

BuffGR

General information

URL: http://backlin.cabgrid.res.in/buffgr
Full name: genomic resource of buffalo
Description: BuffGR is a first comprehensive web genomic resource of buffalo that catalogues 6028881 SNPs and 613403 InDels extracted from the set of 31 buffalo tissues while collectively a total of 7727122 SNPs and 634124 InDels were distributed in Murrah, Bangladesh, Jaffarabadi and Egyptian breeds with reference to Mediterranean breed. It also houses 4504691 SSR markers from all the breeds along with 1458 circRNAs, 37712 lncRNAs and 938 miRNAs.
Year founded: 2022
Last update: 2022-04-11
Version: v1.0
Accessibility:
Accessible
Country/Region: India

Classification & Tag

Data type:
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: ICAR-Indian Agricultural Statistics Research Institute
Address: Centre for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India.
City: New Delhi
Province/State:
Country/Region: India
Contact name (PI/Team): Dinesh Kumar
Contact email (PI/Helpdesk): dinesh.kumar@icar.gov.in

Publications

35480326
Whole-Genome-Based Web Genomic Resource for Water Buffalo (). [PMID: 35480326]
Aamir Khan, Kalpana Singh, Sarika Jaiswal, Mustafa Raza, Rahul Singh Jasrotia, Animesh Kumar, Anoop Kishor Singh Gurjar, Juli Kumari, Varij Nayan, Mir Asif Iquebal, U B Angadi, Anil Rai, Tirtha Kumar Datta, Dinesh Kumar

Water buffalo (), belonging to the family, is an economically important animal as it is the major source of milk, meat, and drought in numerous countries. It is mainly distributed in tropical and subtropical regions with a global population of approximately 202 million. The advent of low cost and rapid sequencing technologies has opened a new vista for global buffalo researchers. In this study, we utilized the genomic data of five commercially important buffalo breeds, distributed globally, , Mediterranean, Egyptian, Bangladesh, Jaffrarabadi, and Murrah. Since there is no whole-genome sequence analysis of these five distinct buffalo breeds, which represent a highly diverse ecosystem, we made an attempt for the same. We report the first comprehensive, holistic, and user-friendly web genomic resource of buffalo () accessible at http://backlin.cabgrid.res.in/buffgr/, that catalogues 6028881 SNPs and 613403 InDels extracted from a set of 31 buffalo tissues. We found a total of 7727122 SNPs and 634124 InDels distributed in four breeds of buffalo (Murrah, Bangladesh, Jaffarabadi, and Egyptian) with reference to the Mediterranean breed. It also houses 4504691 SSR markers from all the breeds along with 1458 unique circRNAs, 37712 lncRNAs, and 938 miRNAs. This comprehensive web resource can be widely used by buffalo researchers across the globe for use of markers in marker trait association, genetic diversity among the different breeds of buffalo, use of ncRNAs as regulatory molecules, post-transcriptional regulations, and role in various diseases/stresses. These SNPs and InDelscan also be used as biomarkers to address adulteration and traceability. This resource can also be useful in buffalo improvement programs and disease/breed management.

Front Genet. 2022:13() | 4 Citations (from Europe PMC, 2026-03-28)

Ranking

All databases:
5584/6932 (19.46%)
Gene genome and annotation:
1669/2039 (18.195%)
Genotype phenotype and variation:
803/1012 (20.751%)
5584
Total Rank
3
Citations
0.75
z-index

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Record metadata

Created on: 2023-09-06
Curated by:
Shiting Wang [2024-08-28]
Shiting Wang [2024-08-27]
Xinyu Zhou [2023-10-15]
Jane Young [2023-09-06]