Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

SwissBioPics

General information

URL: https://www.swissbiopics.org/
Full name: SwissBioPics
Description: SwissBioPics is a freely available library of interactive biological images for visualizing subcellular location data. It includes cell types from all kingdoms of life - from muscle, neuronal and epithelial cells of animals to rods, cocci, clubs, spirals and other more exotic forms of bacteria and archaea.
Year founded: 2022
Last update: 2022-04-12
Version: v1.0
Accessibility:
Accessible
Country/Region: Switzerland

Classification & Tag

Data type:
Data object:
NA
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: Swiss Institute of Bioinformatics
Address: Swiss-Prot group, SIB Swiss Institute of Bioinformatics, CMU - 1 rue Michel Servet CH-1211 Geneva 4, Switzerland.
City:
Province/State:
Country/Region: Switzerland
Contact name (PI/Team): Alan Bridge
Contact email (PI/Helpdesk): Alan.Bridge@sib.swiss

Publications

35411389
SwissBioPics-an interactive library of cell images for the visualization of subcellular location data. [PMID: 35411389]
Philippe Le Mercier, Jerven Bolleman, Edouard de Castro, Elisabeth Gasteiger, Parit Bansal, Andrea H Auchincloss, Emmanuel Boutet, Lionel Breuza, Cristina Casals-Casas, Anne Estreicher, Marc Feuermann, Damien Lieberherr, Catherine Rivoire, Ivo Pedruzzi, Nicole Redaschi, Alan Bridge

SwissBioPics (www.swissbiopics.org) is a freely available resource of interactive, high-resolution cell images designed for the visualization of subcellular location data. SwissBioPics provides images describing cell types from all kingdoms of life-from the specialized muscle, neuronal and epithelial cells of animals, to the rods, cocci, clubs and spirals of prokaryotes. All cell images in SwissBioPics are drawn in Scalable Vector Graphics (SVG), with each subcellular location tagged with a unique identifier from the controlled vocabulary of subcellular locations and organelles of UniProt (https://www.uniprot.org/locations/). Users can search and explore SwissBioPics cell images through our website, which provides a platform for users to learn more about how cells are organized. A web component allows developers to embed SwissBioPics images in their own websites, using the associated JavaScript and a styling template, and to highlight subcellular locations and organelles by simply providing the web component with the appropriate identifier(s) from the UniProt-controlled vocabulary or the 'Cellular Component' branch of the Gene Ontology (www.geneontology.org), as well as an organism identifier from the National Center for Biotechnology Information taxonomy (https://www.ncbi.nlm.nih.gov/taxonomy). The UniProt website now uses SwissBioPics to visualize the subcellular locations and organelles where proteins function. SwissBioPics is freely available for anyone to use under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.
DATABASE URL: www.swissbiopics.org.

Database (Oxford). 2022:2022() | 9 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
3324/6895 (51.806%)
Raw bio-data:
249/582 (57.388%)
Structure:
477/967 (50.776%)
Interaction:
618/1194 (48.325%)
3324
Total Rank
9
Citations
3
z-index

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Record metadata

Created on: 2023-09-07
Curated by:
Shiting Wang [2024-08-28]
Shiting Wang [2024-08-27]
Xinyu Zhou [2023-10-16]
Jane Young [2023-09-07]